Sample 3300020687

Overview

Basic Information
IMG/M Taxon OID	3300020687 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053557 \| Ga0214231
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	61544036
Sequencing Scaffolds	14
Novel Protein Genes	16
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004124	Metagenome / Metatranscriptome	452	Y
F006258	Metagenome / Metatranscriptome	377	Y
F011059	Metagenome	295	Y
F020298	Metagenome / Metatranscriptome	224	Y
F026565	Metagenome / Metatranscriptome	197	Y
F040523	Metagenome	161	Y
F040982	Metagenome / Metatranscriptome	160	N
F047673	Metagenome / Metatranscriptome	149	Y
F050094	Metagenome / Metatranscriptome	145	Y
F054521	Metagenome	139	Y
F058703	Metagenome / Metatranscriptome	134	Y
F071900	Metagenome	121	N
F088000	Metagenome	109	N
F091221	Metagenome	107	Y
F098804	Metagenome / Metatranscriptome	103	N
F102701	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F004124

Metagenome / Metatranscriptome

452

F006258

Metagenome / Metatranscriptome

377

F011059

Metagenome

295

F020298

Metagenome / Metatranscriptome

224

F026565

Metagenome / Metatranscriptome

197

F040523

Metagenome

161

F040982

Metagenome / Metatranscriptome

160

F047673

Metagenome / Metatranscriptome

149

F050094

Metagenome / Metatranscriptome

145

F054521

Metagenome

139

F058703

Metagenome / Metatranscriptome

134

F071900

Metagenome

121

F088000

Metagenome

109

F091221

Metagenome

107

F098804

Metagenome / Metatranscriptome

103

F102701

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214231_100562	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8581	Open in IMG/M
Ga0214231_103075	All Organisms → cellular organisms → Bacteria	2541	Open in IMG/M
Ga0214231_106018	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1494	Open in IMG/M
Ga0214231_112374	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	880	Open in IMG/M
Ga0214231_114630	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	782	Open in IMG/M
Ga0214231_115713	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	744	Open in IMG/M
Ga0214231_118523	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	667	Open in IMG/M
Ga0214231_120062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	632	Open in IMG/M
Ga0214231_120719	Not Available	618	Open in IMG/M
Ga0214231_121590	Not Available	600	Open in IMG/M
Ga0214231_121747	Not Available	597	Open in IMG/M
Ga0214231_121806	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	596	Open in IMG/M
Ga0214231_122681	Not Available	580	Open in IMG/M
Ga0214231_125663	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214231_100562

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

8581

Open in IMG/M

Ga0214231_103075

All Organisms → cellular organisms → Bacteria

2541

Open in IMG/M

Ga0214231_106018

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

1494

Open in IMG/M

Ga0214231_112374

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

880

Open in IMG/M

Ga0214231_114630

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

782

Open in IMG/M

Ga0214231_115713

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

744

Open in IMG/M

Ga0214231_118523

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

667

Open in IMG/M

Ga0214231_120062

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

632

Open in IMG/M

Ga0214231_120719

Not Available

618

Open in IMG/M

Ga0214231_121590

Not Available

600

Open in IMG/M

Ga0214231_121747

Not Available

597

Open in IMG/M

Ga0214231_121806

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

596

Open in IMG/M

Ga0214231_122681

Not Available

580

Open in IMG/M

Ga0214231_125663

All Organisms → cellular organisms → Bacteria

533

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214231_100562	Ga0214231_1005629	F006258	MGINAFCKTGNTITFTAGVVAPTPVQVSSTTLGGNQYRIINAGSTLVFLGYGNDAATANTASANVTSTGLAFPLLAGTDEILTFAPNAYFTGTSTANAVVYITPGDGL
Ga0214231_103075	Ga0214231_1030757	F020298	MTTPNVYIPYPYPQSIEEVEADMNAIIYQPEVPQELQDQYKNFVSSPTNEADLDQAEANSDSMANE
Ga0214231_106018	Ga0214231_1060183	F026565	MAMFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPITLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0214231_109496	Ga0214231_1094964	F071900	LLPVLLLSGCSLMIGNYDANEYAYVNHIRTLAQVSSCSKPEVTQIYVAALTLKNYSQYLPSNDQEVSLVNDLYKLADQLYTFDSPSPAYCKAKMNIIEKTAERIQQVTGSKPR
Ga0214231_112374	Ga0214231_1123743	F050094	MANIHDAIYALNPAIVTISGDIAYDKNEQVVQYDLAAAQAKLTELQAAE
Ga0214231_114630	Ga0214231_1146303	F011059	MGNMTPEQWEARYLNEEGSNYPQEKRLEFVKDYLLDPNLAAVCRKHDVPYQTAFQWKNKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLINGDETYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIESLADKLRTITQEAIDITPKSQTIQQIEQNPQDSE
Ga0214231_115071	Ga0214231_1150711	F088000	AFLESQTENTTQADSSTQNSSFLQNITENTTLLDLITITAQFKESIAEALNVAETEAIVAQFAESIAENISLLDVISIGSAYFFVVTENSGVANTQLIQAGFAENIAENINLADQNSIQAAFLESIAENIGVLDNNCVFGWFKINDNQNPQWGGVSVVIEEIAVFGGSTFGGIDFAGSMKSTRNESLPVGLTPAVVWSDVNTNESSNWAVVDNTQKC
Ga0214231_115713	Ga0214231_1157131	F040982	MTRRKKRDLVASGKWWSDSQKLEAATTYLALGNGAQTAAVLDIPIQTFNRWKYTDWFKKIVEDLKSEDSLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIESKPQQEQIEKTVDDRLAKLA
Ga0214231_118523	Ga0214231_1185234	F054521	MSDAIKDFPMENAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLKQRQEWLKPKEEPKES
Ga0214231_120062	Ga0214231_1200621	F058703	MLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFM
Ga0214231_120719	Ga0214231_1207192	F091221	LIMAKHLENFGKWYDGILNLFPFCLDDTWIKTIGIAWLFTVEGKWSFIPKIVPTNWQYANACVFVRFGLPFAFFMQLRASPTHLFQGGIGWKQSGRIAIHCRFQTDASSAIGYHVGLPNTDHASGFEYGRH
Ga0214231_121590	Ga0214231_1215901	F040523	MHKEIGSCGDSAVATLQANAGTNETMGIEGYWHVECRDAQGNLKWTEEFPNLVVA
Ga0214231_121747	Ga0214231_1217471	F098804	KRQKDPIRLAEKGYLSNNLGKNKINFLTLHLVRKYLKNICNAVNFGRQ
Ga0214231_121806	Ga0214231_1218061	F102701	MSEEQEYDVVIDTLQKHRDILWKMTKSNMDTDMFNIMDQIRLEQITQLEKAITLWRERNESR
Ga0214231_122681	Ga0214231_1226811	F047673	MFVSQIIDEASEILATTDQTKVFRKLTQALQVLMESGHYFHTNAEVDVCTGWDGQTITLPRGIEVPLAVNVDGSPSYFRGRLFQYHVNKGGMYSPVSWAWDDRGFVATLMDIKLPSQLIAVAEHQSDVGKTLRILGNDSNNRPLRSTAADGTPVDGLIIPIHSRSDFPFGTIQPD
Ga0214231_125663	Ga0214231_1256632	F004124	HLTSKEKAEILREHRRSGISLLAFAGKHGLCYSSLLRWRSRPGQGAQVVVPPDTEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR

Scaffold ID

Protein ID

Family

Sequence

Ga0214231_100562

Ga0214231_1005629

F006258

MGINAFCKTGNTITFTAGVVAPTPVQVSSTTLGGNQYRIINAGSTLVFLGYGNDAATANTASANVTSTGLAFPLLAGTDEILTFAPNAYFTGTSTANAVVYITPGDGL

Ga0214231_103075

Ga0214231_1030757

F020298

MTTPNVYIPYPYPQSIEEVEADMNAIIYQPEVPQELQDQYKNFVSSPTNEADLDQAEANSDSMANE

Ga0214231_106018

Ga0214231_1060183

F026565

MAMFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPITLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE

Ga0214231_109496

Ga0214231_1094964

F071900

LLPVLLLSGCSLMIGNYDANEYAYVNHIRTLAQVSSCSKPEVTQIYVAALTLKNYSQYLPSNDQEVSLVNDLYKLADQLYTFDSPSPAYCKAKMNIIEKTAERIQQVTGSKPR

Ga0214231_112374

Ga0214231_1123743

F050094

MANIHDAIYALNPAIVTISGDIAYDKNEQVVQYDLAAAQAKLTELQAAE

Ga0214231_114630

Ga0214231_1146303

F011059

MGNMTPEQWEARYLNEEGSNYPQEKRLEFVKDYLLDPNLAAVCRKHDVPYQTAFQWKNKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLINGDETYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIESLADKLRTITQEAIDITPKSQTIQQIEQNPQDSE

Ga0214231_115071

Ga0214231_1150711

F088000

AFLESQTENTTQADSSTQNSSFLQNITENTTLLDLITITAQFKESIAEALNVAETEAIVAQFAESIAENISLLDVISIGSAYFFVVTENSGVANTQLIQAGFAENIAENINLADQNSIQAAFLESIAENIGVLDNNCVFGWFKINDNQNPQWGGVSVVIEEIAVFGGSTFGGIDFAGSMKSTRNESLPVGLTPAVVWSDVNTNESSNWAVVDNTQKC

Ga0214231_115713

Ga0214231_1157131

F040982

MTRRKKRDLVASGKWWSDSQKLEAATTYLALGNGAQTAAVLDIPIQTFNRWKYTDWFKKIVEDLKSEDSLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIESKPQQEQIEKTVDDRLAKLA

Ga0214231_118523

Ga0214231_1185234

F054521

MSDAIKDFPMENAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLKQRQEWLKPKEEPKES

Ga0214231_120062

Ga0214231_1200621

F058703

MLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFM

Ga0214231_120719

Ga0214231_1207192

F091221

LIMAKHLENFGKWYDGILNLFPFCLDDTWIKTIGIAWLFTVEGKWSFIPKIVPTNWQYANACVFVRFGLPFAFFMQLRASPTHLFQGGIGWKQSGRIAIHCRFQTDASSAIGYHVGLPNTDHASGFEYGRH

Ga0214231_121590

Ga0214231_1215901

F040523

MHKEIGSCGDSAVATLQANAGTNETMGIEGYWHVECRDAQGNLKWTEEFPNLVVA

Ga0214231_121747

Ga0214231_1217471

F098804

KRQKDPIRLAEKGYLSNNLGKNKINFLTLHLVRKYLKNICNAVNFGRQ

Ga0214231_121806

Ga0214231_1218061

F102701

MSEEQEYDVVIDTLQKHRDILWKMTKSNMDTDMFNIMDQIRLEQITQLEKAITLWRERNESR

Ga0214231_122681

Ga0214231_1226811

F047673

MFVSQIIDEASEILATTDQTKVFRKLTQALQVLMESGHYFHTNAEVDVCTGWDGQTITLPRGIEVPLAVNVDGSPSYFRGRLFQYHVNKGGMYSPVSWAWDDRGFVATLMDIKLPSQLIAVAEHQSDVGKTLRILGNDSNNRPLRSTAADGTPVDGLIIPIHSRSDFPFGTIQPD

Ga0214231_125663

Ga0214231_1256632

F004124

HLTSKEKAEILREHRRSGISLLAFAGKHGLCYSSLLRWRSRPGQGAQVVVPPDTEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020687: Freshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences