3300020684: Freshwater microbial communities from Trout Bog Lake, WI - 07JUN2007 hypolimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300020684
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0053528 | Ga0214214
• Sample Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUN2007 hypolimnion
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49921885
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → hypolimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004124	Metagenome / Metatranscriptome	452	Y
F028086	Metagenome	192	Y
F098526	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214214_105335	All Organisms → cellular organisms → Bacteria	1425
Ga0214214_107372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1135
Ga0214214_114045	Not Available	721

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214214_105335	Ga0214214_1053351	F004124	RVWQDGRVKRKSSPSRPPRRHLTAKEKAEVLREHRRSGLSLLAFVRKHGLCYSTLLRWRSRPGQGALVVAPPDLEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR
Ga0214214_107372	Ga0214214_1073722	F028086	MTDEKIPFGGSMKVPSDDCEEAFFALYPDFFYEGSTALNLWIQSWQSALDWIEDNKKVIQLL
Ga0214214_114045	Ga0214214_1140451	F098526	MAYSIFTAAETEAFFNSIPDVGVINRQTNPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGSFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNMIKGLVRPCQPPKEKRATRAMLQQRLDNILGVIHGNT