Sample 3300020680

Overview

Basic Information
IMG/M Taxon OID	3300020680 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053529 \| Ga0214215
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	41364591
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → Bowmanella dokdonensis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F011749	Metagenome	287	Y
F021463	Metagenome	218	Y
F040474	Metagenome	161	Y
F048971	Metagenome	147	Y
F076795	Metagenome	117	Y
F081038	Metagenome / Metatranscriptome	114	Y
F082043	Metagenome	113	Y
F085790	Metagenome / Metatranscriptome	111	Y

Family

Category

Number of Sequences

3D Structure?

F002539

Metagenome

550

F011749

Metagenome

287

F021463

Metagenome

218

F040474

Metagenome

161

F048971

Metagenome

147

F076795

Metagenome

117

F081038

Metagenome / Metatranscriptome

114

F082043

Metagenome

113

F085790

Metagenome / Metatranscriptome

111

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214215_100552	Not Available	4340	Open in IMG/M
Ga0214215_100944	Not Available	3060	Open in IMG/M
Ga0214215_101395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → Bowmanella dokdonensis	2437	Open in IMG/M
Ga0214215_101943	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1981	Open in IMG/M
Ga0214215_103069	All Organisms → Viruses → Predicted Viral	1529	Open in IMG/M
Ga0214215_103958	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1316	Open in IMG/M
Ga0214215_105985	All Organisms → Viruses → Predicted Viral	1025	Open in IMG/M
Ga0214215_106974	Not Available	936	Open in IMG/M
Ga0214215_107346	Not Available	908	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214215_100552

Not Available

4340

Open in IMG/M

Ga0214215_100944

Not Available

3060

Open in IMG/M

Ga0214215_101395

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → Bowmanella dokdonensis

2437

Open in IMG/M

Ga0214215_101943

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

1981

Open in IMG/M

Ga0214215_103069

All Organisms → Viruses → Predicted Viral

1529

Open in IMG/M

Ga0214215_103958

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

1316

Open in IMG/M

Ga0214215_105985

All Organisms → Viruses → Predicted Viral

1025

Open in IMG/M

Ga0214215_106974

Not Available

936

Open in IMG/M

Ga0214215_107346

Not Available

908

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214215_100552	Ga0214215_1005521	F081038	MDHVKNIEKREGVDVGYKSSNIHPADGEGCVGAAGIDKSFTFDMVLDLAYKMDIRPNIIVKSGLNAKWYLKRIQKDVIEDEIQKQSWRDTSRSTMYIIEWDK
Ga0214215_100944	Ga0214215_1009444	F048971	MPICHNMSHQLNLQEKIAIFLKMRNDVLKVPLKKIINNMINKCKYINGESLERHNFGNRPIKLTNIPKDINSASFEEDLLNALGSDENEKSIVELLWGDIQLGKRVHACIIMWISVYILKRPVLYIFRNLSIDQKQLQDDITGTEKYNFNVQFIKSFFDTFNVELQECFEDLGLSIYEEYKLPELKDINSNDIINKLSNKDAMNSNDIFCCLMNNVQLAKINMKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTASEI
Ga0214215_101395	Ga0214215_1013954	F085790	MLMPNPPLNSDPARTVFRSFSSFRFLVFAHRLGAGRAG
Ga0214215_101943	Ga0214215_1019432	F082043	MAESFSYKITTESELFTFDFSQVLSPSETISTSSCSVIVMNGVDPTPSTILIGAPVVVNKTASQRVANGISEVTYRLEMTITTSQGNTYVGVGDLPVYDASLV
Ga0214215_103069	Ga0214215_1030692	F040474	MHVFIEAILVGVFFLPIFWATEKLGLSKWVTLFLAGVFFHLLAEVTGVNKAYLMAHQ
Ga0214215_103958	Ga0214215_1039584	F002539	MRTPYIWTASGTDIALRWKNQYGWIPPSELQEYKDKWKYYQNLPLRNLDDHAKELYEQALKQAKVARIK
Ga0214215_105985	Ga0214215_1059852	F021463	MSDQLETRVVRLEIKTDNHEDDIKELRKSATDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGLDHAIKLLFGG
Ga0214215_106974	Ga0214215_1069741	F011749	VQTIYKLNKNLLDHRSTPPWWREAGESGTKQLYQPEPRPVTYIVPINRILGRLALSPVGVHGTIPAELRNRKQQLFPLGKSDEIGHPGTGSKWYYINSWVMCWPTDHAKKPLTG
Ga0214215_107346	Ga0214215_1073461	F076795	MVYAGFRQDIQDPPEAQSARASPDPHDEEYLEARPNQEEMEDAINKFLVQLEKQERNGFKDLASVLSQLPKPAQGSATSLSVADTIEAGFLPALDKDQANMFTPSELLLGYPRISRDNLHSTRISLDIPGYPWSPFRLVKSGDVHP

Scaffold ID

Protein ID

Family

Sequence

Ga0214215_100552

Ga0214215_1005521

F081038

MDHVKNIEKREGVDVGYKSSNIHPADGEGCVGAAGIDKSFTFDMVLDLAYKMDIRPNIIVKSGLNAKWYLKRIQKDVIEDEIQKQSWRDTSRSTMYIIEWDK

Ga0214215_100944

Ga0214215_1009444

F048971

MPICHNMSHQLNLQEKIAIFLKMRNDVLKVPLKKIINNMINKCKYINGESLERHNFGNRPIKLTNIPKDINSASFEEDLLNALGSDENEKSIVELLWGDIQLGKRVHACIIMWISVYILKRPVLYIFRNLSIDQKQLQDDITGTEKYNFNVQFIKSFFDTFNVELQECFEDLGLSIYEEYKLPELKDINSNDIINKLSNKDAMNSNDIFCCLMNNVQLAKINMKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTASEI

Ga0214215_101395

Ga0214215_1013954

F085790

MLMPNPPLNSDPARTVFRSFSSFRFLVFAHRLGAGRAG

Ga0214215_101943

Ga0214215_1019432

F082043

MAESFSYKITTESELFTFDFSQVLSPSETISTSSCSVIVMNGVDPTPSTILIGAPVVVNKTASQRVANGISEVTYRLEMTITTSQGNTYVGVGDLPVYDASLV

Ga0214215_103069

Ga0214215_1030692

F040474

MHVFIEAILVGVFFLPIFWATEKLGLSKWVTLFLAGVFFHLLAEVTGVNKAYLMAHQ

Ga0214215_103958

Ga0214215_1039584

F002539

MRTPYIWTASGTDIALRWKNQYGWIPPSELQEYKDKWKYYQNLPLRNLDDHAKELYEQALKQAKVARIK

Ga0214215_105985

Ga0214215_1059852

F021463

MSDQLETRVVRLEIKTDNHEDDIKELRKSATDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGLDHAIKLLFGG

Ga0214215_106974

Ga0214215_1069741

F011749

VQTIYKLNKNLLDHRSTPPWWREAGESGTKQLYQPEPRPVTYIVPINRILGRLALSPVGVHGTIPAELRNRKQQLFPLGKSDEIGHPGTGSKWYYINSWVMCWPTDHAKKPLTG

Ga0214215_107346

Ga0214215_1073461

F076795

MVYAGFRQDIQDPPEAQSARASPDPHDEEYLEARPNQEEMEDAINKFLVQLEKQERNGFKDLASVLSQLPKPAQGSATSLSVADTIEAGFLPALDKDQANMFTPSELLLGYPRISRDNLHSTRISLDIPGYPWSPFRLVKSGDVHP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020680: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences