3300020678: Freshwater microbial communities from Trout Bog Lake, WI - 22JUL2008 epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300020678
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0053513 | Ga0214191
• Sample Name: Freshwater microbial communities from Trout Bog Lake, WI - 22JUL2008 epilimnion
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 599169
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007578	Metagenome / Metatranscriptome	348	N
F009395	Metagenome / Metatranscriptome	318	N
F009742	Metagenome / Metatranscriptome	313	N
F013390	Metagenome / Metatranscriptome	271	N
F035194	Metagenome / Metatranscriptome	172	N
F053992	Metagenome / Metatranscriptome	140	N
F069657	Metagenome / Metatranscriptome	123	N
F071950	Metagenome / Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214191_10006	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3322
Ga0214191_10025	Not Available	1208
Ga0214191_10051	Not Available	918
Ga0214191_10100	Not Available	643
Ga0214191_10105	Not Available	626
Ga0214191_10127	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	574
Ga0214191_10149	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214191_10006	Ga0214191_100061	F069657	MSEFSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYEIVSPEWSSRPTPTYRKTSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVGSSQASQPKQVG
Ga0214191_10025	Ga0214191_100251	F071950	MFMCVVNLKAVNKLDLTWKQSFLILVDSELFGRRSLYQFERLSEETKTNHFYTLLKNKIQHNEH
Ga0214191_10025	Ga0214191_100252	F053992	MANNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGLKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPTETTGELLVRITNLMVIIKESYASYENKPPAPANFDVNNGFTMPVCRQWKDDVLNNTQQFLKMQLFWAALTPELRKVVAQRNPNNMTLDDMYQIATDTQREAGPKIKQAVAAVQL
Ga0214191_10051	Ga0214191_100511	F035194	VKGEKTKEQYDKNSMPHNFHIGDKVLIANDFDTTKNPKLVPNWKGPGEIIDINDTNARVKFKNKVKVLNVAKLKHFYENVEKSAEKESEAETFNQNFNQSENAHHDFNDIFNKARNEGPVTRAKAKLIKYKDAAQLALLLLKSEKDTINSLCDPSKHCGRCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAEKINSTEERCHSNVPERFREPLMKVAYKLLSRDEATFEELTPSEQKLWNSFETDQIYRLLTGEADTVPEFRFNWYTVDTTDGYYEGPPITTVPTRTITRPPAQPP
Ga0214191_10100	Ga0214191_101001	F013390	CTHTVQLADESSENVLGIDFLQKFRLRVDPRTEEFTFQAAPSRALFATKNFTIPPFATILAQARTFQDINPELHYIADIGAPKQPWISGLSTLVSFDQRKQCTIPIQNCAPHEITVSTGDILGILSTEKEEPIPFDDNSLATICEQIHQRLPKIKKRAWTRKEIEERCHLGAPEPYRSQYIDILVKHQAAISLDKYDLGLAKNFTHRIHLKDDQ
Ga0214191_10105	Ga0214191_101051	F007578	MFQSRRLSQKIRGQSKKNVFGRTFPANLPKFILLIYGLLKMSQGQQLPDPDPELINAKSLDFAKPKLFFKNIGRYAATSTYIHVRIPFNFSQILDTKTTIEQQYQVLLDKHEDPFKTIAKTTTDVSLMTISASIEDFQDVIKALPQTTEIDLPGRTKRFIALGIAIAAAALSSYNAYRITELNNEISALKSKTDLLVD
Ga0214191_10127	Ga0214191_101271	F009742	MPRLLLVFLLSLRLPDIEAKEAVIFEQFGQLAGITAYLHVHVELSISSVEAQLGKYRQLLKQNCDSELSVLNYMLTYVNTSITNFTLKKDYPDRPEDFPEKSMIRQNAKLWYKVAQLHLRDLEDMEESIAIIRKSLPVVPNRNTGKIPVQAQYAPPQGSHVVNMQAYTD
Ga0214191_10149	Ga0214191_101491	F009395	GCPTNRRQGSKSGRRISGHLPTLIFIIYGLLKMSSGSTVPDPDPELINAQNFDFAKPKLFFKNIGKYTATSTYIHVRIPFNFTTVFNTKQAIAGVYDQLLAQHDEPFKSITKSVTDVSLSIIEGSLEEFRDIIKALPQKTEISTPGRPKRFIAIGISIAAMAMSTFNTVRIT