Sample 3300020673

Basic Information
IMG/M Taxon OID	3300020673 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053511 \| Ga0214189
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 epilimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020673 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053511 | Ga0214189

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 epilimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	3236138
Sequencing Scaffolds	14
Novel Protein Genes	16
Associated Families	16

Dataset Contents

Total Genome Size

3236138

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	13

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Opisthokonta

Not Available

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013182	Metagenome / Metatranscriptome	273	N
F020530	Metagenome / Metatranscriptome	223	N
F033004	Metagenome / Metatranscriptome	178	N
F034043	Metagenome / Metatranscriptome	175	N
F035194	Metagenome / Metatranscriptome	172	N
F038099	Metagenome / Metatranscriptome	166	N
F046172	Metagenome / Metatranscriptome	151	N
F057913	Metagenome / Metatranscriptome	135	Y
F058689	Metagenome / Metatranscriptome	134	Y
F058730	Metagenome / Metatranscriptome	134	N
F067437	Metagenome / Metatranscriptome	125	N
F069657	Metagenome / Metatranscriptome	123	N
F080927	Metagenome / Metatranscriptome	114	N
F096694	Metagenome / Metatranscriptome	104	N
F100448	Metagenome / Metatranscriptome	102	N
F104161	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214189_10020	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2652	Open in IMG/M
Ga0214189_10042	Not Available	1966	Open in IMG/M
Ga0214189_10090	Not Available	1466	Open in IMG/M
Ga0214189_10208	Not Available	969	Open in IMG/M
Ga0214189_10224	Not Available	939	Open in IMG/M
Ga0214189_10290	Not Available	856	Open in IMG/M
Ga0214189_10297	Not Available	850	Open in IMG/M
Ga0214189_10313	Not Available	833	Open in IMG/M
Ga0214189_10314	Not Available	831	Open in IMG/M
Ga0214189_10576	Not Available	655	Open in IMG/M
Ga0214189_10593	Not Available	650	Open in IMG/M
Ga0214189_10611	Not Available	643	Open in IMG/M
Ga0214189_10633	Not Available	632	Open in IMG/M
Ga0214189_10956	Not Available	535	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214189_10016	Ga0214189_100162	F058730	MDNDQVNPPVNPVNNDGNDGDGVQVPIHHAQAVQGADGGISLKVEQTKLPEFWGQKEKDSITANAFIQRVDNMMAANNWSDHVTFRNFALVLRGSADIWLKSQEILEDITGDRRL
Ga0214189_10020	Ga0214189_100203	F069657	MSDSSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYELVSPEWSSRPMPTYRKPSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVSSNQASQPNQTGKACATGVGSTQVRRDESFAKLGRKAQLYETAKDRFQKC
Ga0214189_10042	Ga0214189_100421	F080927	MAEALPPEVERLASFGRALEGTVDITQEDIDDVPSDEGSPSAGLEALPPAKADLLVHLKKKRTYLYRVCTRLRKETVANENVSSVRWNQLAEGAMKHLDDLTTIENEIAEILKPSKKAKEKTKSYKRNLREAIAIFGEFRDSRLQIEQQQRKRSERQPAKEVLSDTGSDQEKGFETADEFNRRLETATEL
Ga0214189_10090	Ga0214189_100901	F104161	LHYFRSRLSPQSEQHYTSQQESDAPNVNQASTHLKLQTYWTTKPVRSIARTKYWGKRLLKSYIRTPTSPTKSPPIARRHQKNSKRIQLWPWLLRQFLPICLLSTAKTPKSYQKKKSFPHGGSHFSKRRSESTSYHQQSENYDQCQGNNSKNDTQGETNDITVKSKENLKTMIKIDEAKIIARDDEVKAIEKTAQEFRASKEKQIDKGIETKALITLPHPSATISYIPILTFTSFICIFISILNSFVADPLDHHFQTFTIGDLSDCKSRHLSQQTASTQADTVVRTLANPDSIRPFKIPGNWPGVHYKNRSRNPLVPSHLLSGRVRKSETKFHHDSFIFDYLDSSR
Ga0214189_10208	Ga0214189_102081	F035194	PFELLFGEKARLPSFPNEDIQKVHYGETSAAERFNLLQKLRKLAHTNATEKGEKTKEQYDKNSMPHNFHIGDKVLIANDFDTTKNPKLVPNWKGPGEIIDINDTNARIKFKNKVKVLNVAKLKHFYENVEKSAEKESEAETFNQNFNQSENAHHDFNDIFNKAHNEGPITRAKAKLIKYKDAAQLALLLLKSEKDTINSLCDPSKHCGRCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAEKINSTEERCHSNVPERFREPLMKVAYKLLSRDEATFEELTPAEQKLWSSFETDQIYRLLTGEPDTVPEFRFNW
Ga0214189_10224	Ga0214189_102241	F020530	MQITQTKSKSGGNQTGTWSAFSAAGLSTARKNVTMVNCLFLAAFVLQMQHSGAETKQPILIDTEFTQPEKLQLRFRPLGKYAATTFTSHIRVPFSYSGLMNLESKMTQRLDQFITDIDRYKFTSTDADRRTIQSTFDIYKQNTKGIFNLFNDLLASLPHVHVRQRRQWDVASFVAATAALSLSTYNTVQISKLETAIEVQQAKTDLLTDISKLHEQHLHQLQGQMSDIGQEIQVVKLFAGWQIRIDRIVAQISSDDAKLRAVIATFERIIVTAFNKKLAP
Ga0214189_10290	Ga0214189_102901	F057913	MADNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGFKGFAREWLFATADMLDWTDAQLTWTN
Ga0214189_10290	Ga0214189_102902	F058689	MFMCVVNLKSVNKLDLTWKQSFLILVDSELFGRRSLYQFKRLSEETHQTNATNQNSTQ
Ga0214189_10297	Ga0214189_102971	F033004	MDNQQVIVPPANNDGNDGNDGVPIHHAQAVQGADGGINLKVEQTKLPEFWGQREKDSITANAFIQRVDNMMAANNWSDHIAFRNFALVLRGSADVWIKSQETLEDITGDRRAWTIVRPLFKAEFAIESDDKRILDGLAHLAMKQNENVRDYFGRLNITNTIIMEAYDSYTVLPVEPVLTGNVQNDTAAMRAHVRARDINLAKFFLLNHFRAGLPTELRRVLNLQNEDELRLNAAVKLATIEARSREEAKCTNKVYATDTVEDEE
Ga0214189_10313	Ga0214189_103133	F046172	PRLCHYNLKPCPAYIHFQQLLRRRTAHRRFRNASRSLQTCRRFKKKTTTTSLIRNSKGWTLEDVRYLRSIWKSFQLTRALNNPDTPRWVPTNPLELELIKSLTWLLGNWPFRLQVLDDQGHLRYRHPGPFLEHLRDQGLLTHLLPCYPEFMSQVHLQRGPGRCERS
Ga0214189_10314	Ga0214189_103142	F100448	MSNHRRNISVSFAQQIEQAKRVFEPRIFSRGSIAYLGFEDSTSKILRALQYMPISALCKTPLEGANSDFMFCFYQILQQLTLLTECEPRHPKAVLAVHRKVIDTLYNHLYFLHSQDWL
Ga0214189_10576	Ga0214189_105761	F096694	EHLHTGREISAHFTNIQIFHFDPSQNRLPQDFDDQIDKLFPEKYSFEYYHPRSVEKRKKLNERAKALQREQEYLEEMPLAQRFPPRSSKSHGSKISTKALNQHPNLQPIKITPDSSSQIRQTDKPLDNLTYDQVADAPFSDEGLGTDYDTVEQNFDPTHLANNDNKQFPRLIHTQNSNDDPNDQIYNRDDLQVEPYSSMRADFRTNDKSQHDSQTTK
Ga0214189_10593	Ga0214189_105931	F013182	EMVAKIMDYVEQRLPPDMSADEKRQALFRGIMDKLNELSASLQIRLGPIAKSLMMFHQNRDMNELFAEVQLPELSLKEKSLLYGRMLFKLLDDPDYVSYATTNPKLLGNLPPKDVWFLTFFAFVTCKRTKGDNLLQLGCSGISSAGKSKLIESVLLTTAHQLLSSTSMSGGDAGVGR
Ga0214189_10611	Ga0214189_106111	F067437	PLLFDPVFARRYIAERKSWLVNKQSMCARCKFQYGEHLIDQNAQNTANLISAADNSLQNLISNQFFDEATFKDLLQVQNLIKTAREANDNLISAQPNSENLINAQSDEIFLISESLREPLLIVANKLLGRQNLSFEQLTPSEQQLWTKFETSDIYQFLTGETNTVPEFRHNWLTFSAKPKVNIDIDKIAQSLTPIPLDQLPPAIQRSFSDPSPP
Ga0214189_10633	Ga0214189_106331	F034043	AIVRKVQQRNRDSQKDTAPGIHFVKEKATASTISSAKTHNKKKTFYGDLATSNDWTVFFELPELKTFSIKHFPQDICQTKKQVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQHFGFTSKELKKLVDECSLVSRRSSYYIWLNHFHQTFIPFQMVQVDIESYQSIAV
Ga0214189_10956	Ga0214189_109561	F038099	DMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPTKTTGELLARITNLMVIIKESYASYENKPPAPANLDVNNGFTMPVCRRWKDDVLNNTQQFLKMQLFRAALTPELRKVVAQRNPNNMTLDDMYQIATDTQREAGPKIKQTVAAVQPENEEDEIAAFQRRKNKNFN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020673: Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences