| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020302 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0117220 | Ga0211595 |
| Sample Name | Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX555996-ERR599018) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | CEA Genoscope |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 87249322 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 25 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri | 1 |
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 3 |
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → Micromonas pusilla virus SP1 sensu lato | 1 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | TARA_065 | |||||||
| Coordinates | Lat. (o) | -35.2528 | Long. (o) | 26.317 | Alt. (m) | N/A | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011904 | Metagenome / Metatranscriptome | 286 | Y |
| F012717 | Metagenome / Metatranscriptome | 278 | Y |
| F013776 | Metagenome / Metatranscriptome | 268 | Y |
| F016003 | Metagenome / Metatranscriptome | 250 | Y |
| F017731 | Metagenome | 239 | N |
| F023136 | Metagenome / Metatranscriptome | 211 | Y |
| F023616 | Metagenome / Metatranscriptome | 209 | Y |
| F024529 | Metagenome / Metatranscriptome | 205 | Y |
| F030783 | Metagenome / Metatranscriptome | 184 | N |
| F041247 | Metagenome / Metatranscriptome | 160 | N |
| F054876 | Metagenome / Metatranscriptome | 139 | N |
| F054924 | Metagenome / Metatranscriptome | 139 | N |
| F062730 | Metagenome / Metatranscriptome | 130 | N |
| F062836 | Metagenome | 130 | N |
| F065241 | Metagenome | 128 | N |
| F077772 | Metagenome / Metatranscriptome | 117 | N |
| F084269 | Metagenome / Metatranscriptome | 112 | N |
| F087299 | Metagenome / Metatranscriptome | 110 | Y |
| F088930 | Metagenome / Metatranscriptome | 109 | N |
| F091241 | Metagenome / Metatranscriptome | 107 | N |
| F093745 | Metagenome | 106 | N |
| F103879 | Metagenome / Metatranscriptome | 101 | N |
| F105107 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0211595_1000946 | All Organisms → cellular organisms → Bacteria | 4429 | Open in IMG/M |
| Ga0211595_1005363 | All Organisms → Viruses → Predicted Viral | 1630 | Open in IMG/M |
| Ga0211595_1005984 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri | 1521 | Open in IMG/M |
| Ga0211595_1008518 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 1226 | Open in IMG/M |
| Ga0211595_1009084 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 1176 | Open in IMG/M |
| Ga0211595_1010160 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → Micromonas pusilla virus SP1 sensu lato | 1099 | Open in IMG/M |
| Ga0211595_1010241 | All Organisms → cellular organisms → Bacteria | 1094 | Open in IMG/M |
| Ga0211595_1010368 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales | 1085 | Open in IMG/M |
| Ga0211595_1010567 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 1074 | Open in IMG/M |
| Ga0211595_1011713 | All Organisms → Viruses → Predicted Viral | 1007 | Open in IMG/M |
| Ga0211595_1012945 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 947 | Open in IMG/M |
| Ga0211595_1014097 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 900 | Open in IMG/M |
| Ga0211595_1015746 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 841 | Open in IMG/M |
| Ga0211595_1017393 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 792 | Open in IMG/M |
| Ga0211595_1017676 | Not Available | 784 | Open in IMG/M |
| Ga0211595_1017830 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 | 780 | Open in IMG/M |
| Ga0211595_1019050 | Not Available | 750 | Open in IMG/M |
| Ga0211595_1020181 | Not Available | 724 | Open in IMG/M |
| Ga0211595_1020689 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 | 713 | Open in IMG/M |
| Ga0211595_1021868 | Not Available | 690 | Open in IMG/M |
| Ga0211595_1022095 | Not Available | 685 | Open in IMG/M |
| Ga0211595_1028642 | Not Available | 586 | Open in IMG/M |
| Ga0211595_1030493 | Not Available | 565 | Open in IMG/M |
| Ga0211595_1032817 | Not Available | 539 | Open in IMG/M |
| Ga0211595_1036384 | Not Available | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0211595_1000946 | Ga0211595_10009466 | F088930 | MKVIKVISISTFLFMLCLIENYLNTFISLDFGVYIFLISLIYIGTEFFNQNLVIPIFLSGILYDSFFSTYYLGLYTSIFLVVVVLSNFVVSRYSRSNAFYIITISLCLLIYK |
| Ga0211595_1005363 | Ga0211595_10053631 | F011904 | MSFDPPAGILDIGNATLRVGKLEVAETTGLSQGLQNIIKNDLLVTENETYTTDQKWGLKLPNTWVSEFELKGGSGKYVEFNFYNEGSTSNTLGYTLNFKDTTLSLRYDNGSWTTATIPTIVDTYRKVNVFFERNVISVTIDGTQVLYYKHTGTPPPVMSRVTSATGGAFVNAFFESNHSGNSEFKNLRIVNGRFISDQTSNIAFMGGNLGVGVNSPQEALDIRGNMHLNRVSNVSSVSVDSNVVTEYTGPHDRPLGKYPEVAMTADDNLSTLGYKASVSSQLTGNDAFRAFDATGATTYWHSQYPYYTHVTGTYNPGQSSGGTGTPSGTLPTTELISGHQGEWIKL |
| Ga0211595_1005984 | Ga0211595_10059841 | F054876 | MENSISLGLIHGLVYGIVPVAPWFVALKRYLLEGKEKGQLAVAGTVVGQVSLLALTFFGWSQVLWVWYYFEPALIILGTMAVVRCALDCWVEQPSSLQATVVPLANKKEGFYYFLVNFGLMFCNPTHFEGSQTLISSIPGNRYFYLVAFTITYTAIIFAFWATVGHRIFGKACSGFGAQQTLNRYRIRRVAVAMVAALFIQFGNCTPEALVIYHFDSLLAYTPFEQLKHFKTRGYTWEPVNNNGSEFTRQSPRSTNKSGILPEQNPRSYIQNKSMWNTETRYDECNQTRERELSNEDWNNEATFHEFNGINQATLHARLIPFNLYMVPNWEKHENKEYLLTLRKIRHEMDEKLLSEGSILEKATLLPFSDNWEYEVDYVTSPRLLEQKAESKASFEDMRKLIRTTKWTSDHLHLGNGNDIEASYGKLHKLPAEVRIPWHYPAIKPSETLNSADEVET |
| Ga0211595_1008518 | Ga0211595_10085182 | F016003 | MKSIYTSIIMKSIYKTCIDGELDELKKRRNEINEIIEELPKNDDDLREDEDDISFAIAFCKDHDTALEMYKYLYEKCGYPKHCKYYAMVGAAASRNAKLINYMYNNLEENEKSYFLGELEDELAMTDHPNPNVFIEYALLELNN |
| Ga0211595_1009084 | Ga0211595_10090842 | F017731 | MLRPPLSSTIFTRPNTSRRTRTSAFRTENESSRLRDIEIRIERTRGHCSLAYGRQEKAYIKVLDHLEKERLDILKGTKEKSCCNTINDSCTE |
| Ga0211595_1010160 | Ga0211595_10101601 | F011904 | MSFEPPAGILDIGNATLRVGKLEVAETTGLNQGLQNVIKNDLLVTENTTYTTNQKWGIKLPTTWVAEFEVKGHSGKYIDFNFYNENSVSNAQGYNLTFMDTTMTLKYDNGSALGGGAVTIPTIVGTYRKVHIFFERNVIAVSIDGTRYLYDKRPSVLSRVISATGSAFVNLFIEEDGDDSAFKNLRIVNGRFISDETSNIAFVGGNLGVGVHSPQEALDIRGNMHFNRVSNVSQVSVDSNVVTEYTGPHDRPLRKYPELALTADDNLSTSGYKASVSSLLTGNDGFRAFDATEATTYWHSQHPYYTHVTGTYNPGQEADGAGTPATDTTLPTTELISGHQGEWIKL |
| Ga0211595_1010241 | Ga0211595_10102413 | F084269 | MFRLKNKKQRENSLIVMRAISRIKKYEMNENSSYGLHNSLL |
| Ga0211595_1010368 | Ga0211595_10103681 | F077772 | MTEDSSGPQISGEPTTININAGPQVMGGQTQSTNAVAGLVLAILGLTTLLGGAAALCCGPSLCFTIPAMFLVSADKKNIGGTHHPDSGMINASNVINIISLIGALLGLGLYLVFFIFLGGVGAFA |
| Ga0211595_1010567 | Ga0211595_10105672 | F016003 | MKSIYRTCIDGELDELKKRRNEIDEIIEDIPNVDNDLREDEDDLSFAAAYCKDHDTALEIFKYLYEKCGYPRHCVHYAMVGAAASRNAKLINYIYNDVDEHEKEEFIGDLEDELAMTDHPNPRVFIEYALFELNKV |
| Ga0211595_1011713 | Ga0211595_10117132 | F024529 | MFTPITKRNKFGATYQWAILSVLPMDNGTGCQAQDGMRPTDINAALGMPNEARTGLSMLLKVMAAQGLIKRHELGPRWVEYTRLLPLRKREWIARMIRG |
| Ga0211595_1012945 | Ga0211595_10129453 | F023136 | MNVIERKAIIRKDKNTTPKDFRLDFKFNICFVDIIKEANIQNCVRKIIGKTKSGVTAKNLIKPGAXAYPTAIKTFLNGTL |
| Ga0211595_1014097 | Ga0211595_10140973 | F013776 | MKEFSFTVTKTGWIHVEADSVEDAEARLQENFGHLYVITETGEELSNGWETTGEVELEEECAFNDYEEDYD |
| Ga0211595_1015746 | Ga0211595_10157461 | F062730 | MGTETPIGYRLVRVGVRGRVPTLRTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRRKRTQ |
| Ga0211595_1017393 | Ga0211595_10173931 | F105107 | SLNDILDCRMSNFFSYIYKHIFLRCFFISLLTLLVFFVLDFVISLITESSGFSMLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLFKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFDLNINLGIYIPPTIALC |
| Ga0211595_1017676 | Ga0211595_10176761 | F103879 | THLERIDSGLEQHKPESRLMTHFRRVVQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKHKREKETRLSLRNWSYRQELALDRRTTYWRERKKMRLYSIEYNLKNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATRKLVVRARKPVAEPSELLAGDIISVWFDWAKTA |
| Ga0211595_1017830 | Ga0211595_10178302 | F093745 | MHLSKNKKTSFILNTLGIEILSISEKLDNSVQTYVHCSLRDRILTLHSHSLDEYSERELELLSKIEASVSKENKKNRILELTWDDFLNNHELLNIEIILNFTNIKIDKKNELTPPNLALLIKKPEEKKLLWEKMQALLNDD |
| Ga0211595_1019050 | Ga0211595_10190502 | F054924 | VEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK |
| Ga0211595_1020181 | Ga0211595_10201811 | F023616 | INTGIMNSAEDKPNQIILNALPLDFVKYLEIVVEAVXDINPCPENLIKKIATNKKATDDVLEKKKEEKDKSIVTKIANLSTFTSSIFFPIHIRSKLLNRVAEA |
| Ga0211595_1020689 | Ga0211595_10206893 | F062836 | MEKIRLNEQKRRLLKKEWSHTVYNNMPMQVEEDLRL |
| Ga0211595_1021868 | Ga0211595_10218682 | F012717 | LYVSTWGXKVVAGTSAIFHPKKYLPMLGLENVVDLVKKDFYTKKDIDPCYNFFYSSALTRLISLEIASSTFNSQCLSYEMLCKKIPPKLGCRSTIYSTLNYAVSKGFFIKKFSKSDKRMKAYCLSESYSLMLTQWYLDQKKYFSN |
| Ga0211595_1022095 | Ga0211595_10220952 | F065241 | MSDMSYTFEQFEQDKQTLLNLIADCEELEKQQNSDEFFIQCDEFAQEKYTVXYEFSYLHC |
| Ga0211595_1028642 | Ga0211595_10286422 | F030783 | MITDFKNKTPFLLGLLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSKDLVNSKTNITFIDFDIEGSKLVSLTDQSLSKNYHQRAPPKI |
| Ga0211595_1030493 | Ga0211595_10304931 | F091241 | YSIIHQPQSVKTSVSTNDVHNSDTNPYNFFGGSKKIENSEIAGRADHLTKYVFKYGTKFYPNAPCEMSGDKTLSLQSTITQLGLTNPYIATPEYGTNLMSNQYEARDFVLVNSFKTTGDKVENGINTAATSAPVEIDLTFAQATQNKQLITFVEQANTLYIKNDGISSMVKG |
| Ga0211595_1032817 | Ga0211595_10328171 | F041247 | VSDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQQNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRSKYNK |
| Ga0211595_1036384 | Ga0211595_10363842 | F087299 | LSALIISQFNFFANFIARFDLPEAVGPAKSNNFLDKINLF |
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