Sample 3300020244

Overview

Basic Information
IMG/M Taxon OID	3300020244 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0117281 \| Ga0211710
Sample Name	Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556020-ERR599149)
Sequencing Status	Permanent Draft
Sequencing Center	CEA Genoscope
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	133462649
Sequencing Scaffolds	20
Novel Protein Genes	22
Associated Families	21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
Not Available	8
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	TARA_070
Coordinates	Lat. (^o)	-20.3356	Long. (^o)	-3.2659	Alt. (m)	N/A	Depth (m)	800
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F005684	Metagenome / Metatranscriptome	393	Y
F008912	Metagenome / Metatranscriptome	326	Y
F010693	Metagenome	300	Y
F012125	Metagenome	283	Y
F012354	Metagenome	281	Y
F013190	Metagenome / Metatranscriptome	273	Y
F015350	Metagenome	255	Y
F025858	Metagenome / Metatranscriptome	200	Y
F029285	Metagenome / Metatranscriptome	189	Y
F057445	Metagenome / Metatranscriptome	136	N
F060979	Metagenome / Metatranscriptome	132	Y
F062844	Metagenome	130	N
F063198	Metagenome / Metatranscriptome	130	N
F066848	Metagenome / Metatranscriptome	126	N
F066858	Metagenome / Metatranscriptome	126	N
F081452	Metagenome / Metatranscriptome	114	N
F092360	Metagenome / Metatranscriptome	107	Y
F095618	Metagenome / Metatranscriptome	105	Y
F097524	Metagenome / Metatranscriptome	104	Y
F099438	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F002753

Metagenome / Metatranscriptome

532

F005684

Metagenome / Metatranscriptome

393

F008912

Metagenome / Metatranscriptome

326

F010693

Metagenome

300

F012125

Metagenome

283

F012354

Metagenome

281

F013190

Metagenome / Metatranscriptome

273

F015350

Metagenome

255

F025858

Metagenome / Metatranscriptome

200

F029285

Metagenome / Metatranscriptome

189

F057445

Metagenome / Metatranscriptome

136

F060979

Metagenome / Metatranscriptome

132

F062844

Metagenome

130

F063198

Metagenome / Metatranscriptome

130

F066848

Metagenome / Metatranscriptome

126

F066858

Metagenome / Metatranscriptome

126

F081452

Metagenome / Metatranscriptome

114

F092360

Metagenome / Metatranscriptome

107

F095618

Metagenome / Metatranscriptome

105

F097524

Metagenome / Metatranscriptome

104

F099438

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0211710_1001127	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5168	Open in IMG/M
Ga0211710_1001237	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4899	Open in IMG/M
Ga0211710_1003133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2850	Open in IMG/M
Ga0211710_1007339	Not Available	1727	Open in IMG/M
Ga0211710_1015198	Not Available	1145	Open in IMG/M
Ga0211710_1020656	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
Ga0211710_1022708	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14	911	Open in IMG/M
Ga0211710_1025165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	859	Open in IMG/M
Ga0211710_1027104	All Organisms → cellular organisms → Archaea → Euryarchaeota	824	Open in IMG/M
Ga0211710_1029620	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14	785	Open in IMG/M
Ga0211710_1034191	Not Available	724	Open in IMG/M
Ga0211710_1039537	Not Available	668	Open in IMG/M
Ga0211710_1039739	Not Available	666	Open in IMG/M
Ga0211710_1041922	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	646	Open in IMG/M
Ga0211710_1045440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	616	Open in IMG/M
Ga0211710_1050120	Not Available	583	Open in IMG/M
Ga0211710_1055331	Not Available	550	Open in IMG/M
Ga0211710_1059244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	528	Open in IMG/M
Ga0211710_1060922	Not Available	519	Open in IMG/M
Ga0211710_1062785	All Organisms → cellular organisms → Archaea	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0211710_1001127

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

5168

Open in IMG/M

Ga0211710_1001237

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

4899

Open in IMG/M

Ga0211710_1003133

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2850

Open in IMG/M

Ga0211710_1007339

Not Available

1727

Open in IMG/M

Ga0211710_1015198

Not Available

1145

Open in IMG/M

Ga0211710_1020656

All Organisms → cellular organisms → Bacteria

961

Open in IMG/M

Ga0211710_1022708

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14

911

Open in IMG/M

Ga0211710_1025165

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas

859

Open in IMG/M

Ga0211710_1027104

All Organisms → cellular organisms → Archaea → Euryarchaeota

824

Open in IMG/M

Ga0211710_1029620

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14

785

Open in IMG/M

Ga0211710_1034191

Not Available

724

Open in IMG/M

Ga0211710_1039537

Not Available

668

Open in IMG/M

Ga0211710_1039739

Not Available

666

Open in IMG/M

Ga0211710_1041922

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

646

Open in IMG/M

Ga0211710_1045440

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

616

Open in IMG/M

Ga0211710_1050120

Not Available

583

Open in IMG/M

Ga0211710_1055331

Not Available

550

Open in IMG/M

Ga0211710_1059244

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia

528

Open in IMG/M

Ga0211710_1060922

Not Available

519

Open in IMG/M

Ga0211710_1062785

All Organisms → cellular organisms → Archaea

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0211710_1001127	Ga0211710_10011276	F057445	LQKLSKAAVNEILPKAVSLILIKERLENKRKKDFLDLCDLFSVAPDVIKIM
Ga0211710_1001237	Ga0211710_10012372	F097524	MFENDNLYLPVAERRPFVNVQLKPAETISAAETHLGPQ
Ga0211710_1003133	Ga0211710_10031333	F081452	MIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA
Ga0211710_1007339	Ga0211710_10073391	F012125	MKPDSGRKSFFSAGKPKNLPAFYFLVVAGIILMVLLFKWFV
Ga0211710_1015198	Ga0211710_10151981	F099438	RFIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA
Ga0211710_1020656	Ga0211710_10206562	F029285	MKNKADYSKYECPYSHLEKESGHELHGPEGYQDVYGVWCACGFRAPVFYLNPDELGLKLKNETDVATCA
Ga0211710_1022708	Ga0211710_10227083	F013190	GQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIIAFHSSDVFVLAENSNLIK
Ga0211710_1025165	Ga0211710_10251652	F095618	IKNAFLKLSVEVLNTVSETFFNTLYMFRKPGILLRTFSHRATNFRPNILVTNTPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK
Ga0211710_1027104	Ga0211710_10271041	F005684	LSEGAGGSLTVYDTEESPLSTMQVVRRKSGVREGRLCNRNEPRQAHYEPERGRFPDRGWNEHPRRSKSKQVRMASTGPGRMHS
Ga0211710_1029620	Ga0211710_10296203	F013190	GQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSEVFVLAENSNLIK
Ga0211710_1034191	Ga0211710_10341911	F008912	VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKRRIPFLQSIKDMCKHKFVIDMIIFPGIPELSKERIAKALKDGMQRADSIQFVDEQYEQYLHTMSILDDEKDFYRMIKSDTHIVG
Ga0211710_1039537	Ga0211710_10395372	F062844	VFLIQAGIASLCAEAANGKAATPATSAKSRMVFLVMIFDFTDK
Ga0211710_1039739	Ga0211710_10397392	F063198	LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNIGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDK
Ga0211710_1041922	Ga0211710_10419222	F015350	MLVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELYDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0211710_1041922	Ga0211710_10419223	F025858	LDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRYEDL
Ga0211710_1045440	Ga0211710_10454401	F060979	VTTTTEDEQLASIALEDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTSFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLAWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEDAEAWRLRAVNDHGMGKPSDASLTDTP
Ga0211710_1046053	Ga0211710_10460531	F066858	PSENSTRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG
Ga0211710_1050120	Ga0211710_10501201	F002753	TVSDRFTPVDFATESVNDTVSDRFTPAAFDIESVKLTDSDRFTLAAFDIESVNDTVSDRFTPVDFATESVNDTVSDRFTPAAFEIESVNNTVSDRFTGAVFEIESVNDTVSDRFTLAAFDIESVNDTVSDRFTPVDFATESVNDTVSDRFTPAAFDIESVKLTDSDRFTLAAFDIESVNDTVSDRFTPVDFAT
Ga0211710_1055331	Ga0211710_10553311	F092360	GKVHEIDWHHIQMTNRDDYLGFIQGVGYEGDREADTRFGAHCDGAQNAYVFAGNWAGTWVSNTALSHSDLQGDDSETKASQPFRVNGFAMDPLGWATKNNKDATNTWIWSPSHHPDRLEDTSENKKDPYPNITSGAADSNYLKATASMDDEDYFQTQADNSYWANNYPLDTA
Ga0211710_1059244	Ga0211710_10592441	F066848	MRFSTRSIHSLRHPQDDVYRTVKRFVGPGFAMGSTDLVLNIVLDGARQIAANQRLALDPVALPVGPDADAYLAA
Ga0211710_1060922	Ga0211710_10609221	F010693	MIGFLIFGLVVLSTVCLWLLIEERKSPKFLVWFIPVLLVIVTSTYVTYTSLLGFPKVGIPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTRKKHDALEGVKGKAEEGKFMVLGEDTSQGAGDELD
Ga0211710_1062785	Ga0211710_10627851	F012354	PVLKIKSSSVNPVASIPKPTPIAKKAIDSLNNVGLPVFLNPIYEIMPITRPTNSPTKFRIISKKNSNYADSVTVLNKVSEQIF

Scaffold ID

Protein ID

Family

Sequence

Ga0211710_1001127

Ga0211710_10011276

F057445

LQKLSKAAVNEILPKAVSLILIKERLENKRKKDFLDLCDLFSVAPDVIKIM

Ga0211710_1001237

Ga0211710_10012372

F097524

MFENDNLYLPVAERRPFVNVQLKPAETISAAETHLGPQ

Ga0211710_1003133

Ga0211710_10031333

F081452

MIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA

Ga0211710_1007339

Ga0211710_10073391

F012125

MKPDSGRKSFFSAGKPKNLPAFYFLVVAGIILMVLLFKWFV

Ga0211710_1015198

Ga0211710_10151981

F099438

RFIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA

Ga0211710_1020656

Ga0211710_10206562

F029285

MKNKADYSKYECPYSHLEKESGHELHGPEGYQDVYGVWCACGFRAPVFYLNPDELGLKLKNETDVATCA

Ga0211710_1022708

Ga0211710_10227083

F013190

GQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIIAFHSSDVFVLAENSNLIK

Ga0211710_1025165

Ga0211710_10251652

F095618

IKNAFLKLSVEVLNTVSETFFNTLYMFRKPGILLRTFSHRATNFRPNILVTNTPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK

Ga0211710_1027104

Ga0211710_10271041

F005684

LSEGAGGSLTVYDTEESPLSTMQVVRRKSGVREGRLCNRNEPRQAHYEPERGRFPDRGWNEHPRRSKSKQVRMASTGPGRMHS

Ga0211710_1029620

Ga0211710_10296203

F013190

GQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSEVFVLAENSNLIK

Ga0211710_1034191

Ga0211710_10341911

F008912

VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKRRIPFLQSIKDMCKHKFVIDMIIFPGIPELSKERIAKALKDGMQRADSIQFVDEQYEQYLHTMSILDDEKDFYRMIKSDTHIVG

Ga0211710_1039537

Ga0211710_10395372

F062844

VFLIQAGIASLCAEAANGKAATPATSAKSRMVFLVMIFDFTDK

Ga0211710_1039739

Ga0211710_10397392

F063198

LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNIGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDK

Ga0211710_1041922

Ga0211710_10419222

F015350

MLVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELYDGLTKIERNVSTIDSVVDEKFKTLWMMINNK

Ga0211710_1041922

Ga0211710_10419223

F025858

LDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRYEDL

Ga0211710_1045440

Ga0211710_10454401

F060979

VTTTTEDEQLASIALEDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTSFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLAWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEDAEAWRLRAVNDHGMGKPSDASLTDTP

Ga0211710_1046053

Ga0211710_10460531

F066858

PSENSTRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG

Ga0211710_1050120

Ga0211710_10501201

F002753

TVSDRFTPVDFATESVNDTVSDRFTPAAFDIESVKLTDSDRFTLAAFDIESVNDTVSDRFTPVDFATESVNDTVSDRFTPAAFEIESVNNTVSDRFTGAVFEIESVNDTVSDRFTLAAFDIESVNDTVSDRFTPVDFATESVNDTVSDRFTPAAFDIESVKLTDSDRFTLAAFDIESVNDTVSDRFTPVDFAT

Ga0211710_1055331

Ga0211710_10553311

F092360

GKVHEIDWHHIQMTNRDDYLGFIQGVGYEGDREADTRFGAHCDGAQNAYVFAGNWAGTWVSNTALSHSDLQGDDSETKASQPFRVNGFAMDPLGWATKNNKDATNTWIWSPSHHPDRLEDTSENKKDPYPNITSGAADSNYLKATASMDDEDYFQTQADNSYWANNYPLDTA

Ga0211710_1059244

Ga0211710_10592441

F066848

MRFSTRSIHSLRHPQDDVYRTVKRFVGPGFAMGSTDLVLNIVLDGARQIAANQRLALDPVALPVGPDADAYLAA

Ga0211710_1060922

Ga0211710_10609221

F010693

MIGFLIFGLVVLSTVCLWLLIEERKSPKFLVWFIPVLLVIVTSTYVTYTSLLGFPKVGIPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTRKKHDALEGVKGKAEEGKFMVLGEDTSQGAGDELD

Ga0211710_1062785

Ga0211710_10627851

F012354

PVLKIKSSSVNPVASIPKPTPIAKKAIDSLNNVGLPVFLNPIYEIMPITRPTNSPTKFRIISKKNSNYADSVTVLNKVSEQIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020244: Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556020-ERR599149)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences