3300020224: Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_ViralDNA

Overview

Basic Information

• IMG/M Taxon OID: 3300020224
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116196 | Gp0213325 | Ga0187841
• Sample Name: Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_ViralDNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43262503
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	5
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extremophilic Microbial Mat Communities From Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043237	Metagenome / Metatranscriptome	156	Y
F092976	Metagenome	106	Y
F096328	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187841_100256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	5382
Ga0187841_100769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	2713
Ga0187841_102544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1448
Ga0187841_103186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1307
Ga0187841_107894	Not Available	861
Ga0187841_108892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	814
Ga0187841_123750	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187841_100256	Ga0187841_1002564	F096328	MTEAAYFISKEAEVILAPFVQVLVGAESPPTISSPLLAATWDYSFNDDLLVDLKLACKANIYGRVSHQTLADIRKSLENGVMVALLVPPYLYLLSPWDIGWDGSLESLRTRPFVLVPKGVLEQVWDVYFKMTS
Ga0187841_100769	Ga0187841_1007693	F096328	MKDSAYFWSKEAEIILAPYVQILIGAESPPTISSPLLAATWDYSFNDDLMVDLKLACKAHLYGRIADKTLADIKKSLRDGVLVAVLVPPRLYLLHPWDITWDGTLEALWNRPSVLLPKNVLEQVWELYERMTN
Ga0187841_102544	Ga0187841_1025442	F096328	MTEAAYFWSKEAEIILAPYVQILIGAEKPPTISSPLLAATWDYSFNDDLLVDLKLACKANIYGRVSHQTLADIRKSLENGVLVALLVPPRLYLLFPYDLTWDGRLEALWNRPSVLVPKNVLEQVWSIYERMTN
Ga0187841_103186	Ga0187841_1031864	F096328	MTEAAYFFSKEAEVILAPYVQVLVGAEKPPQISSPLLAESWDYDFDGLLIDLKLAMKANIYGKISEQTLADIKKALRGGVLVAVLVPPRLYLLHPWDITWDGSLEALRNRP
Ga0187841_107894	Ga0187841_1078941	F043237	MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFRVYCLASKPLEIPHMPLKLHYDEKTRRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVVETLKKQYGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR
Ga0187841_108892	Ga0187841_1088922	F096328	MTEAAYFFSKEAEVILAPYVQVLVGSEKPPQISSPLFAESWDYDFDGLLIDLKLAMKAGIYGKISEQTLADIKKALRGGVLVAVLVPPRLYLLHPWDITWDGTLEALWNRPSVLLPKNVLEQVWELYERMTN
Ga0187841_123750	Ga0187841_1237501	F092976	MAAQEILFWKQELRRLSQEFLRRWKKCPRCGSRWADIAWDAESDHEILLVECRSGHLFRADDQFWLFACDDNSDAGVY