3300019766: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_2_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019766
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217625 | Ga0193959
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_2_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 383325201
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000866	Metagenome / Metatranscriptome	855	Y
F005940	Metagenome / Metatranscriptome	386	N
F008361	Metagenome / Metatranscriptome	334	Y
F012678	Metagenome / Metatranscriptome	278	Y
F022457	Metagenome / Metatranscriptome	214	N
F040603	Metagenome / Metatranscriptome	161	N
F051950	Metagenome / Metatranscriptome	143	Y
F061006	Metagenome / Metatranscriptome	132	Y
F073262	Metagenome	120	Y
F084398	Metagenome / Metatranscriptome	112	N
F088705	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193959_1044842	All Organisms → Viruses → Predicted Viral	1302
Ga0193959_1061109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1084
Ga0193959_1098028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	820
Ga0193959_1121007	Not Available	724
Ga0193959_1121571	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	721
Ga0193959_1133801	Not Available	682
Ga0193959_1168247	Not Available	598
Ga0193959_1172227	Not Available	590
Ga0193959_1212301	All Organisms → cellular organisms → Eukaryota → Sar	525
Ga0193959_1212749	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	525
Ga0193959_1216478	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193959_1044842	Ga0193959_10448422	F040603	CGSTNMMYYTKHKTLADTSETSLFTVPTGYVLWVNYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNGS
Ga0193959_1061109	Ga0193959_10611093	F012678	MLNQHSLEEIAEIHNLLIDLKKEYEEGIKPILIKNSSVIFRNLHTIPKLQKIQINR
Ga0193959_1098028	Ga0193959_10980282	F005940	FAIRGFQLVNDLVVDMPINISDQIERPFRKALRINGQGELIYQALRNKEGKNVQLEIYRPDTLLRGIIENVSSPVEEISPRGSVTTYCLVRFRGSKVISTSSSGEGLGIGLLGVKRLG
Ga0193959_1121007	Ga0193959_11210071	F088705	FCIIKSEEFVVVSTNIDPLELYFVLDQLKMSLLTGGEYEL
Ga0193959_1121571	Ga0193959_11215711	F051950	MWGYISTEATYQLNFNVGFSTTRSDVLVHLSQXQYXXXFXFAFLXSFYYLFVTRIVRYRSLKMRPKIVTSFRPHGKXGDFLAATIPAIXCLNILSNSNFILRLLEXQNEASLFTVRVRARQXYXVYKFELKNFTDILTAPKNVGYNRXTVNTFGDLQVAEDYLYMLQLRSQNVXVKNYXSEVLQKAGEVKKNHIVAPQEQL
Ga0193959_1133801	Ga0193959_11338012	F008361	EATKELEKATSAIEKAETSKARLDASVELKKATARLEGINYLS
Ga0193959_1148558	Ga0193959_11485581	F061006	QSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDF
Ga0193959_1168247	Ga0193959_11682472	F022457	PEYVEYDGEQINKADIPAPILKALEEAEVAKADAELTKRAEEALPNFNIEVAKTLIAKFDTDEAVMEALKGADAVFGESMEEFGKSDADGNFATAQDKLDALVKSYMDENKIKKSQYAVAYAAVAKTDEGKALINKSYKGE
Ga0193959_1172227	Ga0193959_11722271	F073262	AARCHANNCFEGLRAPVGIATQLLALQSATNTIGTNLNASLNRPKTIATLQDKCPMLVASLLAVCEVVTTADPPVCWSTVHATLKATEWAAHHANVLDSAGSETNKPAPVTSPPLAQDTGNVRFTASSTNNPTKGISVFCIRPSCMPHCQEHLNCKMTVEVLVQGAGAVSFEVQQMALINDKLELPQSTEEFRGSL
Ga0193959_1212301	Ga0193959_12123012	F084398	MARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSIN
Ga0193959_1212749	Ga0193959_12127491	F000866	AIFGRDMLFDVPYLADWNKVGDYRQRQTDRNTARENKGRVEWDYAVGDKVLVRKEGILRKSESKYEKEPWTVSQVHTNGTIRIQRGTKSERLNIRRVTPFFEEMEI
Ga0193959_1216478	Ga0193959_12164781	F073262	HANDCLEGLRAPVGVATQPLALQSATNTIGANLNASLNRPKALATLQDKCPMLVATLLAACKVATAAALPLHWSKVHATLKPAEWAACHARTLDTAGNEIDKPAPLIPPPMASDSGNGRFTTSSAHNPNEGMSTFRIRPSCMPSHQEHQDRNRTFEVLVQGVGVASFEAQQMV