3300019755: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_5_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019755
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217620 | Ga0193954
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_5_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287282475
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F010090	Metagenome / Metatranscriptome	308	N
F051181	Metagenome / Metatranscriptome	144	N
F053227	Metagenome	141	N
F073262	Metagenome	120	Y
F088720	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193954_1037513	All Organisms → Viruses → Predicted Viral	1255
Ga0193954_1064931	Not Available	866
Ga0193954_1107969	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	622
Ga0193954_1124660	Not Available	568
Ga0193954_1137023	Not Available	537
Ga0193954_1139861	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193954_1037513	Ga0193954_10375133	F088720	MQEEAKAAVDVIAVTTTVSTLMGWLPAVAAALSIVWTVIRIFEADTVKGWFKFRK
Ga0193954_1064931	Ga0193954_10649311	F010090	LSMNISSGKDQEMDFKFIQRINEGSNGGFQTKQFLNVRGGISTVIFNAINVIPEKSDIYVSGKGSSTSSASASFDLLLVQDGY
Ga0193954_1107969	Ga0193954_11079692	F001488	MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMNQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0193954_1124660	Ga0193954_11246602	F053227	MTEFNPDSYENMLMLYNEPTMEDEENYVPYLFGAKYLWYGYKVDACDNLENIIKDEM
Ga0193954_1137023	Ga0193954_11370231	F051181	MDDLLEQAQENISENVDKQEKEKLYLVLQESLNELSGLEELNKTYKELRDKAIKDLYNVGISAQSLATTTELTRQMIHRIVKXNKDS
Ga0193954_1139861	Ga0193954_11398611	F073262	ANLNASLNRPNALATLQDRCPMLVATLLAACKVATTAALPLHWSKVHATLKPTKWAAHHARALDTAGSEIDKPASLIPPPMASDLGNGRFAASSTHNPNEGMSMFRIRPSCMPSRQEHQDRNRMFEVLVQGVGAASFEAQQMALINNEFELPQSAEEFRGCINGYQVLLRAFLGVH