3300019375: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin

Overview

Basic Information

• IMG/M Taxon OID: 3300019375
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213382 | Ga0187898
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 523140507
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter smithii	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	6
All Organisms → cellular organisms → Eukaryota	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium FB2012	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix suchowensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003381	Metagenome	490	Y
F046107	Metagenome / Metatranscriptome	151	Y
F059515	Metagenome	133	Y
F060488	Metagenome	132	Y
F061388	Metagenome	132	N
F081965	Metagenome	113	Y
F086383	Metagenome / Metatranscriptome	110	N
F100155	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187898_1002582	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter smithii	9542
Ga0187898_1010802	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	4776
Ga0187898_1019997	All Organisms → cellular organisms → Eukaryota	3466
Ga0187898_1077682	Not Available	1437
Ga0187898_1096893	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1205
Ga0187898_1133061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	929
Ga0187898_1173697	Not Available	746
Ga0187898_1191444	Not Available	690
Ga0187898_1192709	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	687
Ga0187898_1193624	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	684
Ga0187898_1204467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium FB2012	655
Ga0187898_1210657	Not Available	640
Ga0187898_1228133	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	602
Ga0187898_1237273	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	584
Ga0187898_1243354	Not Available	574
Ga0187898_1255374	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix suchowensis	553
Ga0187898_1262196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	543
Ga0187898_1281643	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187898_1002582	Ga0187898_10025821	F086383	MTLHIALDGIYVNVNHMIIQKLAEYLTQNSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSIAWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSKGANLHAHANTDPEVEARLISNEKKRLGL
Ga0187898_1010802	Ga0187898_10108028	F046107	PFLTNKKVIKPRSNIFKSDSVVSTKLSPDSSFNELLRRDSPFVEIDDDPVLSLCLISTMSMLLVKFGILEYLSNNSSNELLNDSYCAS
Ga0187898_1019997	Ga0187898_10199973	F046107	MHFRKLYYEGIFPFLTNKNEIKPISNIFKIDNVVFTKLSQGSSFIELLGRDSPFVEIDDDPVLSVCLISTTSTLLVKFGNLEYLSNNSSNELLMIGIA
Ga0187898_1073909	Ga0187898_10739092	F086383	MTLHIALDGIYVNVNHIIVQKLVEYLTEKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLGDKNQIIQKFNDVIKQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAK
Ga0187898_1077682	Ga0187898_10776821	F086383	IFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL
Ga0187898_1096893	Ga0187898_10968931	F046107	YAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSKKKYFNIYFISSYYCYIKKL
Ga0187898_1133061	Ga0187898_11330611	F061388	IRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSKEIFAEIISAETAHPGSLKAIKEYFPRTYQVYQDMMKARKKR
Ga0187898_1173697	Ga0187898_11736971	F086383	ASKSYTVKTIFPMQDETMQHILNSYDLTFSEKALLSALDRSITWNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKKRLGL
Ga0187898_1191444	Ga0187898_11914441	F086383	MTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTNESVKPSFIKNINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCCSNCKDYAKEEQNRQNFRNYYKRYKDTM
Ga0187898_1192709	Ga0187898_11927092	F046107	MCFGKLYYAGIFPFLTNKKEIKPRSNIFKINSVVFTKLSPDSSFIELLERDSTFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLI
Ga0187898_1193624	Ga0187898_11936242	F046107	IFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSKLLVKFGILQYLSNNSSNELLMIGIVYYKKNYTLLVSVIRLCPLLL
Ga0187898_1204467	Ga0187898_12044672	F100155	MTLNEMIFKRKSCRSFSSIPVDAAIIEPITAFPLKPLYPDIKVHWDIVPRNQVKCICPWTTPQLITIYSEE
Ga0187898_1210657	Ga0187898_12106572	F060488	MRSLVVKKLKAFRPTVPSVILFLLASYRTICSGDSIQLVGVCAAIVPFICQFKDFNVNKDVPAVKDVISSYILNLILMALYLGWILLLTWAGQRFLPSYIPNPYFKDMLFIAIAADVVFISSVIPVCRELTPFQRMIPGLILTNA
Ga0187898_1213041	Ga0187898_12130411	F086383	MTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYA
Ga0187898_1228133	Ga0187898_12281331	F046107	MYFGKLYYTGIFPFLTNKKEIKPRSNIFKIDSVVYTKLSLDSLFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFG
Ga0187898_1237273	Ga0187898_12372731	F046107	MYFGKLYYAGIFPFLTNKKEIKFRSNIFKIDSVVSTKLSPDSSFIELLGQDSSVVEIDDDPVLSLCLISTTSTLLVKFDILQY
Ga0187898_1243354	Ga0187898_12433541	F081965	NKSYRSVPTRRGIENAKKLKNTIMASFEAKIVWKRPRKRENKNYHFVSFLPDE
Ga0187898_1255374	Ga0187898_12553741	F003381	INLVCPSVCDADQPKNTSKDPLHVPNGPMTPSRTKALKEAINALVLKVSTRSELQGPLEYQEEILVHLIHVQEGSNTNLFGP
Ga0187898_1262196	Ga0187898_12621961	F059515	TTQAIQAVGTLEVSESEDKPFTDMYGYEFCCKIVDATYTIIKAEDLSEDMALWQKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYYLYASDAENFIYKDGAQYNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALANKALGELENKNYTSEYKYAEKFGKEDW
Ga0187898_1281643	Ga0187898_12816431	F046107	LENTMYLGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIEDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMKGIARAAVNVG