3300019374: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3

Overview

Basic Information

• IMG/M Taxon OID: 3300019374
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213381 | Ga0187897
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 306822252
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041506	Metagenome / Metatranscriptome	160	Y
F041521	Metagenome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187897_1014085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	2363
Ga0187897_1014253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri	2338
Ga0187897_1101277	Not Available	548

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187897_1014085	Ga0187897_10140853	F041506	MSKTYTLEDGESLMAELKSTRGMMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREDVSRRNADLERQKRERAAELNMSLEEYEIYLKSLIIS
Ga0187897_1014253	Ga0187897_10142531	F041506	MNKIYTLDDNGEFMADLKAMHEEMLLMKRRLECDEITPDEWKQWHSGYRARLDEIKEAVSRMHDELSLRNADLERQKRERAAELNMSFDEYENYLKSLIIS
Ga0187897_1101277	Ga0187897_11012771	F041521	GFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEALLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIKK