3300019372: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1

Overview

Basic Information

• IMG/M Taxon OID: 3300019372
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213388 | Ga0187904
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 258284731
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1
Not Available	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F052303	Metagenome	142	Y
F061388	Metagenome	132	N
F072921	Metagenome / Metatranscriptome	120	Y
F076682	Metagenome	117	Y
F078046	Metagenome	116	Y
F081965	Metagenome	113	Y
F100397	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187904_1014584	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1783
Ga0187904_1027103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1221
Ga0187904_1027580	Not Available	1207
Ga0187904_1046742	Not Available	867
Ga0187904_1054118	Not Available	792
Ga0187904_1061998	Not Available	729
Ga0187904_1070568	Not Available	675
Ga0187904_1089037	Not Available	588
Ga0187904_1091285	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	579
Ga0187904_1103065	Not Available	541
Ga0187904_1113555	Not Available	513
Ga0187904_1113849	Not Available	512
Ga0187904_1115268	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187904_1014584	Ga0187904_10145842	F072921	MKSRLILTTDRKSASEGEYMEIRWACDACPDSLYLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0187904_1027103	Ga0187904_10271034	F061388	VARGDMISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKK
Ga0187904_1027580	Ga0187904_10275801	F076682	MKRTISVLLLLLLLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEGHHDNLRMIMVTDPEVALLAAEYNADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHNAQWDIEYYTGGYADGYSYIALRSELMEDFEFFWLTYHEGQGSNTFKPYQPAIITEKYIGDGYENDIYSFDVENHSLYIRCRYYMEWEPLVPNEYGEGPGEKQSKFSDWSESAVFGKNSTQIIPDEPTTYEAPIISDMKIVLSEGDENSHI
Ga0187904_1046742	Ga0187904_10467422	F100397	MKRILILALSLILLLCLTACGSKMPYDLSGTASIELHAYDTASTEPFAKIVVDGDEVATIVEMFSSLKLKELDYTEPSINGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLSAVKGEARLVYDTAPDEITVKAWPVSMWGNLDAVDEAIAVPVSGEKIT
Ga0187904_1054118	Ga0187904_10541181	F041521	TFDAGEFRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLAAVHSDSDLDTNSDNVEITAVTEEELRDGTIATRLGGSWELGENYPVIKK
Ga0187904_1061998	Ga0187904_10619982	F078046	VSGIAADEIKYVYEQLKDRYDLLLTTTFALDNGFTIDRPIVVGKAHGQIIWLYKDRGMFIMDVMDAEQTMGTHWHPDDTQEAVNDIAEFMDGKSDYDMIPYGQ
Ga0187904_1070568	Ga0187904_10705681	F076682	ILSVLLSLFLLLSLFSVTAFAAEENDISKFELPAPKAPNYFVYTDGNASEGDHDHLRMIMVADPEVALLAAEYSKDSEAFYEKYGLWSFEICIQYDVSLDGEDNWQHNEEWDTNWYTDGIGNGYPYESIRSELMDDFEFFWLTYYEGEDGSVFEPYKPAITTYVYHHGAWDENIYSFDVENHSLYIRCRYYMEWEPLVKNDDGEGPGEKQSKFSDWSESAVFGK
Ga0187904_1089037	Ga0187904_10890372	F041521	ATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLEAVHSDSPLKPGSDNVEITPVTEDDLRNNTIATQLGTLWEQGENYPVIKK
Ga0187904_1091285	Ga0187904_10912852	F041521	TIKTGYAGDYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLEAVHSDSDLDTNSDNVEITPVTEEELRGDTIVTKLGECWTRGENYPVIKK
Ga0187904_1103065	Ga0187904_11030651	F081965	THSISTRDVIENSKKIVKKLKKLKNSIMASFQARIGWKRPRKRENKIYRSVPFHPNAK
Ga0187904_1113555	Ga0187904_11135551	F081965	NSKTIAKKFKKLKNTITGSFQAKIRRKRPRKTENKNYRSVSFQPDAILKIPKK
Ga0187904_1113849	Ga0187904_11138492	F052303	MNVIWSILAVLSFIGGQAYLVYLLRKLDKVLEHRPSNEPTFTYDDSCRYPEDVVE
Ga0187904_1115268	Ga0187904_11152681	F041521	IYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEAELTAFGTLRSVNAIKKCYYLADDDLEAVHSNSDLKPGSDNVEIEGVTEDDLRNNTIATQLGEYWTQGENYPVIKK