3300019371: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2

Overview

Basic Information

• IMG/M Taxon OID: 3300019371
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213380 | Ga0187896
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287192134
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → environmental samples → Eubacterium sp. CAG:202	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041506	Metagenome / Metatranscriptome	160	Y
F041521	Metagenome	159	Y
F052303	Metagenome	142	Y
F076682	Metagenome	117	Y
F081939	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187896_1000259	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	85090
Ga0187896_1003500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	8345
Ga0187896_1010657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3019
Ga0187896_1027108	Not Available	1448
Ga0187896_1061590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → environmental samples → Eubacterium sp. CAG:202	775
Ga0187896_1073349	Not Available	678

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187896_1000259	Ga0187896_10002595	F081939	MAKKISKKEKVGMLADKLNEAIESCNFEPTEELDLFAEAVALLIAYWGKESDWSPIEKASYYGYVTTTVMEKGLDVEIKKFEDFRKSMKTKIGN
Ga0187896_1003500	Ga0187896_10035002	F041506	MCKTYTLEDNDGLMAELKSMHGKMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREEISRRNADLERQKRERAAELNMSFEEYENYLKSLIIS
Ga0187896_1010657	Ga0187896_10106572	F041506	MSKTYTLEDGESLMAELKSTRGMMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREEVSRRNADLERQKRERAAELNMSLEEYETYLKSLIIR
Ga0187896_1027108	Ga0187896_10271082	F041521	EYRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKDSFNNTPTIYMGGFLSLSNTGAKTTLENCLFAGKFERGANLTDEAELTAFGTLRSVNAIKKCYYLADDDLEAVHSNSDLKPGSDNVEIEGVTEDDLRNNTIATQLGEYWTQGENYPVIKK
Ga0187896_1061590	Ga0187896_10615902	F052303	MKVIWIILAVLSFIGGQVYLFYLLRKLDKFLERRPSNEPTFTYDDSCRYPEDVVE
Ga0187896_1073349	Ga0187896_10733491	F076682	LPAPKAPNYFVYTDGNASEGDHDHLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLDGEDSWQHNEEWDTEYYNDGHVNGYPVQSLRSELIEDFEFFWLTYYEGPDSDTFVPYKPAILTEKFTGDGYEQDTYSFDVENHSLYIRCRYYMEWEPLVKNDDGEGPGEKQSKFSDWSESAVFGKNGTQITPDEPTTYAAPIISDMKIVLSEGDENS