Sample 3300019107

Basic Information
IMG/M Taxon OID	3300019107 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217103 \| Ga0193400
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300019107 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0217103 | Ga0193400

Sample Name

Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949)

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	43569192
Sequencing Scaffolds	22
Novel Protein Genes	26
Associated Families	18

Dataset Contents

Total Genome Size

43569192

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	South Pacific Ocean: TARA_124
Coordinates	Lat. (^o)	-9.1463	Long. (^o)	-140.515	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

South Pacific Ocean: TARA_124

Coordinates

Lat. (^o)

-9.1463

Long. (^o)

-140.515

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000276	Metatranscriptome	1390	Y
F000809	Metagenome / Metatranscriptome	882	Y
F000879	Metagenome / Metatranscriptome	850	Y
F001255	Metatranscriptome	736	N
F002056	Metagenome / Metatranscriptome	598	Y
F004175	Metagenome / Metatranscriptome	449	Y
F006742	Metatranscriptome	365	N
F032301	Metagenome / Metatranscriptome	180	N
F033816	Metatranscriptome	176	N
F047103	Metagenome / Metatranscriptome	150	Y
F050387	Metatranscriptome	145	Y
F056299	Metatranscriptome	137	N
F059484	Metagenome / Metatranscriptome	134	N
F059627	Metatranscriptome	133	N
F073585	Metatranscriptome	120	N
F075646	Metagenome / Metatranscriptome	118	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193400_1000999	Not Available	1573	Open in IMG/M
Ga0193400_1001001	Not Available	1573	Open in IMG/M
Ga0193400_1001002	Not Available	1573	Open in IMG/M
Ga0193400_1001004	Not Available	1573	Open in IMG/M
Ga0193400_1001005	Not Available	1573	Open in IMG/M
Ga0193400_1001165	Not Available	1482	Open in IMG/M
Ga0193400_1001914	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1215	Open in IMG/M
Ga0193400_1002705	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1052	Open in IMG/M
Ga0193400_1002999	Not Available	1009	Open in IMG/M
Ga0193400_1004145	Not Available	874	Open in IMG/M
Ga0193400_1004211	Not Available	868	Open in IMG/M
Ga0193400_1005318	Not Available	782	Open in IMG/M
Ga0193400_1007993	Not Available	648	Open in IMG/M
Ga0193400_1009686	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	594	Open in IMG/M
Ga0193400_1010920	Not Available	563	Open in IMG/M
Ga0193400_1011147	Not Available	557	Open in IMG/M
Ga0193400_1011241	Not Available	555	Open in IMG/M
Ga0193400_1011545	Not Available	549	Open in IMG/M
Ga0193400_1011974	Not Available	540	Open in IMG/M
Ga0193400_1012457	Not Available	530	Open in IMG/M
Ga0193400_1013815	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	507	Open in IMG/M
Ga0193400_1014178	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193400_1000999	Ga0193400_10009992	F032301	LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCYEKLLGHNFDRRAKSS
Ga0193400_1001001	Ga0193400_10010012	F032301	LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKKPYGHNFQISALKLNQRYFVYIKIPLIQGQ
Ga0193400_1001002	Ga0193400_10010021	F032301	LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNEKLGGHNFDFRAKSS
Ga0193400_1001004	Ga0193400_10010041	F032301	LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCYEKPSGHNFDFKAKSS
Ga0193400_1001005	Ga0193400_10010051	F032301	VASKLSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNEKLGGHNFDFRAKSS
Ga0193400_1001165	Ga0193400_10011652	F047103	MGTLFALLFGRAFDKMGKKANICPKLTKNAYFGPILAVFGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193400_1001914	Ga0193400_10019141	F033816	EEGEGRFLYFNSSSTATSLTLLGALILLGVIFYLVYVGGLLAPAAGSYSNYQRYGQDYGQYYGQARSSDMGYDFNAVNILQWISMLQEVYEKFDYNDVDCQKLLICEVLRDEESFGDVSRRLQGGFELAKYLEVLNMPDEFRELLDEYMDASERSLGQKECAEFFQCPYSLKESVKRNFSGNSL
Ga0193400_1002705	Ga0193400_10027051	F050387	VDFSQATRTADGRLCVVKEESVETLAKDPVLECKHKDVEKCHYTYITFFKPAQEETCEENFEKSCQITFKQEAVKETIRKCYRPLEKVCNGQGAQECRTVYESSCSTRYIDQGQGKFVGDTKCEKQPVEICGAGCVSREGAEECHDKQVDTLVDVPEETCDLNPQKTCRLVTKLVPSLKPKQECTTVPQETCSLRFTQPKRLSKPLRTEWCLDEEEAAEAADTYVTRDGRVFNI
Ga0193400_1002999	Ga0193400_10029991	F032301	MKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNKKLLGHNFDRRAKSS
Ga0193400_1004145	Ga0193400_10041451	F059627	MPILAAPPPAPVTAKKTRPSWDSFLAHSKVPQGHTDELLTWLAKVQQKKASVRANHRRDRDLRVEAMLEAARVSAQAELEAKQRSRLARWRGLHQDQLLSPPSSPEQETEHEAADSALCDCESCVLCARHKSSMYGKCYCNMIFSPRPVFMDFTSPLSATDAFSDDTTSIEADNFLASLGGKRKSEDDQLTSYKRARA
Ga0193400_1004211	Ga0193400_10042111	F006742	MLRFLTIAAVAICASASDGMMKKIHQDMMVFNSMSACWGKGNMVYFKVAMKEAMESCMQENHSGLLKPANPILSLLNQNANTLPFPVNNNNPFQSLPAPAPSNNPFKSSNLNLGAWQNLWGRNKREATEGLLQPTEEDFKEFLMDFEDFKGDVASKMGNLTCVLKKMNALDDNLQINMKEYTEDFWSKVDLSQTMAGEDPEWRNMLITGYKDCYDIARSWPQSTLNRNPLMKVFGRHMVFFKCARKEEAKCCGMACANDMLTTLYGSNDAF
Ga0193400_1005318	Ga0193400_10053181	F000879	MKALLVCSVLVAATSAQYLGYPYALGSPLTYTYTPHVVKPVIKEVEVPYDVVSYAVKETGCVNSFNLPVPCAQEGEARRKRAADEEAAAEAPAAAPVLAYAGLPYAYGGLGYPYSYGLPYAYPQVQVAEPTVTEVEVPQLKYVPVEKKIELLPACHNGLGFPVPCA
Ga0193400_1006977	Ga0193400_10069771	F000073	ASAAAREVVEADKKAAVALPASGKCSIPAKELKLEGTFVDFMSKNSKLRDMVETGKGNLQWERDIPPAALSNLENLAKSDFKTNLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPEANKKEVEGLIEQKAMTLDLYEILGTCTWVPPK
Ga0193400_1007993	Ga0193400_10079931	F075646	MTFSPLIIWAKGPFFFEQLFSVVARTWLGIKSERLFLDPKFQFLAKKSDFCHTTPIFVDDPFLALDMTVNFPPWKRFFDFPFRSYSCFRKKIRLTAQKVFPPPTCGSSVCQ
Ga0193400_1008679	Ga0193400_10086791	F000048	AAEGASLKMTTHTESDAEVAALKERYNKVKAVSDAWVKKCEVLVKEWVLLDNTVTELNSWVAKDKSEEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193400_1009310	Ga0193400_10093101	F000073	ASAAAREVVEADKKAAVALPASGKCSIPAKELKLEGTFVDFMSKNSKLRDMVETGKGNLQWERDIPPAALSNLENLAKSDFKTNLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPGGVKTEVEGLIEQKKISLDLYEILGVCTWVEPK
Ga0193400_1009686	Ga0193400_10096861	F056299	PYTESECTTEYKQDCQYEWRGHGNDKVWAPIEGTCQNVPYDECRDVAKTHAKQVAYQECNDVPEQKCVSVPKQTCVTVPDQICKTEPLTECQDVPRQQCHSEHKRFPVRISRQAPKKVCDEVHSTAPLAAAAVHQAPVHHQASPSVQDLLNYGVPAVPTQTVPQIIDARDKQKLQSAAKDDRIVFA
Ga0193400_1010920	Ga0193400_10109201	F001255	TWGPLPQRKHCLIMLQVLFLAGLASAVPAPEADPLLYTGHPLTYAVPYVTYHAPKCETEFEEVKGQSCVTKPVTECNDVEVPSHKIVTEDVCQNVTTAECTHSTYSAGVYYGKREAEADPQVLVGAVPAVVPYHNCVNKVTEVCYPVQKVEPTTITEKSCLLKGEVECTEVVVATIPKVTCTHEEHT
Ga0193400_1011147	Ga0193400_10111472	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193400_1011241	Ga0193400_10112411	F059484	FFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSAKKWGPLAKL
Ga0193400_1011545	Ga0193400_10115451	F073585	GALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193400_1011974	Ga0193400_10119741	F000276	KNRCVAGDTAYKCAVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGSQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC
Ga0193400_1012457	Ga0193400_10124571	F004175	TDSCLVNLIDVTLACEDANSKLVEVVTVADVDSEDHVGNSLLQIWELTFGPSDFEHKGWSRF
Ga0193400_1013815	Ga0193400_10138151	F002056	RYQMNPGKDALFRGEFEVIKELVADLGADGEASKRECDKVIDKNGPAKTGGTGIKQLRENIAESKLSYEIMDDAAQVFLKSKIMDNIAKYFSLIVFTSYMRQAADLARNSLSDEEKNKNALSGGKTAIPGDQLKITKTFVQYMEEKNNLRNMVEEGKGRLQWERDIPA
Ga0193400_1013862	Ga0193400_10138621	F000809	SPVPSLTPASTCTCPCTMDLDLEEWCLVRNKMLRFHFNISEDIKAVVQSIRAEMRPELIPLAEEKANFGKLVKTAVREMWSLEYEVDGLQSQFAESIGTLDLDNIDVDFIEDMMLKSKPLQGILNDIRGRQIKKLEEVKKTYGEAIKELEAMIVERPPKGLEEDIPAE
Ga0193400_1014178	Ga0193400_10141781	F000276	AVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGSQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019107: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences