3300019089: Metatranscriptome of marine microbial communities from Baltic Sea - GS853_ls4

Overview

Basic Information

• IMG/M Taxon OID: 3300019089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214204 | Ga0188876
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS853_ls4
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38483878
• Sequencing Scaffolds: 8
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y
F000051	Metagenome / Metatranscriptome	3266	Y
F001219	Metagenome / Metatranscriptome	744	Y
F003946	Metatranscriptome	460	Y
F010164	Metagenome / Metatranscriptome	307	Y
F017317	Metagenome / Metatranscriptome	241	Y
F020701	Metagenome / Metatranscriptome	222	Y
F030104	Metagenome / Metatranscriptome	186	Y
F037722	Metagenome / Metatranscriptome	167	Y
F084268	Metagenome / Metatranscriptome	112	Y
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188876_1000031	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7145
Ga0188876_1000899	Not Available	2477
Ga0188876_1003702	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1289
Ga0188876_1004186	Not Available	1205
Ga0188876_1010816	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	654
Ga0188876_1011691	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	623
Ga0188876_1011778	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	620
Ga0188876_1015977	All Organisms → cellular organisms → Eukaryota → Sar	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188876_1000031	Ga0188876_10000312	F037722	MTNQEIGATIGFYIFVGLMGWALVSFFPLTWGQALIISWMFNKLIDVLE
Ga0188876_1000899	Ga0188876_10008995	F097458	HRSYKLPPIFLSFTFAALLPRRGIFALAHTHDISAIYKIPIDSRYGLLGSPILFDTHTLVVRRQSLK
Ga0188876_1003702	Ga0188876_10037021	F030104	MSREIRVQLEAVLQTILFILLYWTMAIMAFDDDQEEVVEFMDTSFFNFFSLIIFYLCFKHSIHYFAFLEASVVEGRTVGFIAKQFFRDFLNTFSLMLRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNHDDRSFLLEDENDFANDFFYTYFVI
Ga0188876_1004186	Ga0188876_10041861	F020701	IGTCLAISALAAMALTSSPSGAANPGKPIASTTQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPETSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIFPKADGLYLCGDKNAAKTWNFDLADIIEQGFNIDGSHFGIKYIMSGRKVKLNIFDGPTRNTVSHGPLEMSGHETLDLETVKYGDDHWDSKAKSFTLVEV
Ga0188876_1005223	Ga0188876_10052231	F003946	TPARLIPSQSIAPRGDRQGAAETDVSFPAVAAAGPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHTTYVTNYESQQEEECEENFRKNCFINYEKIAFNETVQVCRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECETIQDEKCADETSGYTTLTKCSKWPREECKVTKKAVKKYTPITGCTKEPRELCAPAGCGFKEGAEECFDKTQTVVQDAPKEECSLEPQRTCAHVTKLVPKLEPSEECVDVPKEVCTRARTNPRKVKKPVVKKWCYTPSAESGLA
Ga0188876_1008159	Ga0188876_10081591	F000051	LQEDIAAKVQIIDKNVADELELLPQGDKVPQDAQDFKDELNRIKKYVLDLKEKTVTECNNYSEDVKYWAEYRTGIKEFVPWLEQAEKASTSGLVKPTNLTEAEALYQNSSTFTNSCESHLKLLNAANEAAKKMTSHKESDEEVAKLKSRYDKVKAVSDEWMKKVDTLVKEWKLLDNTVSELNAWVAKDKTADGENQFSLEKMESTLGELKNIFKQKEKLVENL
Ga0188876_1010816	Ga0188876_10108161	F017317	CCPEYDWFCCADNMYCAATEADCPFVAAKRTLIKMAAAKKVVLKKEPCDGTPCPAGCCPEYDWFCCADNMYCAATEADCPFVAAKKTLIKMAAKKEPCDGTPCPAGCCPEYDWFCCADNMYCAATEADCPFVAAKKALIKMAAKKEPCDGTPCPAGCCPEYDWFCCADNMYCAATEADCPFVAAKKTLIKMAAKKEPCDGTPCPAGCCPEYDWFCCA
Ga0188876_1011691	Ga0188876_10116911	F084268	MLFLLATPEYNNVQSNTTKVKVHLRTGIAEILDNHQDLMGKVENNIVEIETNFENKSEKFVFVLQDAVFIVSNKGLDAEVEEKDTSIYIYAKKAREINSNTSVDEITKLYDEKKSELDIELAKVTETE
Ga0188876_1011778	Ga0188876_10117781	F010164	LAEKGFTQSLFWLQSWKTLYEKEKVEIVETKYKTVKTGLTETFSTTENLITNFENKAFVALQRYIIFVTASKILRKFFFLSEKEQAKLIEVTVSKLGGLSK
Ga0188876_1015106	Ga0188876_10151061	F000049	DKVYTSAEFKRERDNFHALCKDLERSEVKKWLAQILEILMAERAKDQKRDELEKLDITIKKHENLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTREIAPSCVENVDELIERQEKSLVQLETRRGVVKDLIEKGRKILENPDKPKFLEGHVQRIEVGWDDTKQKA
Ga0188876_1015977	Ga0188876_10159771	F001219	SGLFDFDLTFPSEALLFLILATVITNVFLSPISNQLDERAEFINYTLRKSTILLTFGYEKLTTCVGLLTEEIDEMNRQVKLVRNYTNSKFEEELTVIQNENLNILSQLKGDLAIKSAYLFSNVTNDLTALTDKFFENKFQSV