3300019079: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000052 (ERX1782316-ERR1711880)

Overview

Basic Information

• IMG/M Taxon OID: 3300019079
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216956 | Ga0193099
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000052 (ERX1782316-ERR1711880)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19193277
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean: TARA_039
• Coordinates
  • Lat. (^o): 18.5745
  • Long. (^o): 66.4895
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F001293	Metagenome / Metatranscriptome	729	Y
F004368	Metagenome / Metatranscriptome	441	Y
F004819	Metagenome / Metatranscriptome	422	Y
F020701	Metagenome / Metatranscriptome	222	Y
F023529	Metatranscriptome	209	Y
F031086	Metagenome / Metatranscriptome	183	Y
F062820	Metagenome / Metatranscriptome	130	N
F068484	Metagenome / Metatranscriptome	124	Y
F089917	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193099_100016	All Organisms → Viruses → Predicted Viral	3657
Ga0193099_101014	Not Available	1206
Ga0193099_101068	Not Available	1184
Ga0193099_101224	All Organisms → Viruses → Predicted Viral	1128
Ga0193099_101283	All Organisms → Viruses → Predicted Viral	1105
Ga0193099_102116	Not Available	912
Ga0193099_103299	Not Available	763
Ga0193099_103315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	762
Ga0193099_106311	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	573
Ga0193099_107782	All Organisms → cellular organisms → Eukaryota → Sar	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193099_100016	Ga0193099_1000166	F062820	MTTSTWQHINIGDTCVHCGRSTAYGHSDMLFVDRIPADADLLDDDGKPIGVREGYACRECIYMDEDDFFHEDNVSN
Ga0193099_101014	Ga0193099_1010141	F020701	NKSVKPIVGTCLAISALAAMALTSSPAAVTNPGKPVASATQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPETSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIYPKADGLYLCGDKNAAKTWHFDLADIIEQGFNIDGSHFGIKYIMSGRKVTLKVYDGPTRNTINHGPLEMGGHETLDLETVKYGDEHWDSKAKSFTLVEV
Ga0193099_101068	Ga0193099_1010681	F023529	DRVYFVDTKQGSAQPAYSPVAQADLRHPSAITAGDTIYVGEQRCDVISSDSDLTVGLATEASVLENYHSASVVCAQALSENAHSTVDAIVTHDVIEVSLKGSTQSCTSTDRPALRYVFAGDDVSTGADDCIDQSACADILAYNDKNRLVRWASGQTIASSSAHTLMDDLDIAINDRVSIRTLNDHTYETRTVDYRSFAGTTGDNYFTVSQPFTAAHTEKSIFLNYKGTTSSAACSGRGLCDGSSAECQCFKGYTGQACQIQNALAA
Ga0193099_101224	Ga0193099_1012243	F004819	TCNRDINVARASTYVTWDHDKEMWCEVDHLMMNFYIKARTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGN
Ga0193099_101283	Ga0193099_1012833	F004819	TCNRDINVARASTYVTWDHDKEMWCEVDHLMMNFYIKARTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGG
Ga0193099_102116	Ga0193099_1021161	F031086	MNNYVKELIRDYNGDSYEHFTRYIYMTFQREIDASKGTQKNKYIKIRNDILKYIVSNRGNVTLELRRNKYQ
Ga0193099_103299	Ga0193099_1032991	F089917	TWGPHKSNMALTMFNMHNSLFPSEAGFGGFQEFRRMDRLMEQMDRQRAEFLQDMDTEPAAPEQGKPFAQSYSFSSFTSNTNGEVVTHRSENFQSSAGEKLSRSRRAIGQGESAKAIEETMKGEEQTRTLHNMEEQDLQAFNQQHAARLHWQPFHALEPRAEQPKHALHAALEQDIDRVAGSQ
Ga0193099_103315	Ga0193099_1033152	F004368	MGTRLADIIMDRHEDFLYEDSRAMKLTPYVMAERCLQAELTAIFLDGKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEVNWYEWYESAQLYTEVYE
Ga0193099_106311	Ga0193099_1063111	F001293	MIRNSLICKLINVQASMKENNEKKINNEHETSKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0193099_107782	Ga0193099_1077821	F068484	ANEPMDSGDVAPNDRVSLRMADLHTYETRTVDFVSFGGAAGNNFFTVSQPFSAAHVQKRIHLNYKGTTSSAACSGRGLCDGSAAECQCFKGYTGQACQIQNALAA
Ga0193099_107960	Ga0193099_1079601	F000075	LVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK