Sample 3300019071

Basic Information
IMG/M Taxon OID	3300019071 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217114 \| Ga0193428
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300019071 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0217114 | Ga0193428

Sample Name

Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067)

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	17361031
Sequencing Scaffolds	21
Novel Protein Genes	27
Associated Families	21

Dataset Contents

Total Genome Size

17361031

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	South Pacific Ocean: TARA_128
Coordinates	Lat. (^o)	0.008	Long. (^o)	-153.7022	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

South Pacific Ocean: TARA_128

Coordinates

Lat. (^o)

0.008

Long. (^o)

-153.7022

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000608	Metatranscriptome	991	Y
F001255	Metatranscriptome	736	N
F002148	Metatranscriptome	589	Y
F004175	Metagenome / Metatranscriptome	449	Y
F008118	Metatranscriptome	338	N
F021918	Metatranscriptome	216	N
F023281	Metagenome / Metatranscriptome	210	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193428_100590	All Organisms → Viruses → Predicted Viral	1566	Open in IMG/M
Ga0193428_100810	Not Available	1375	Open in IMG/M
Ga0193428_101752	Not Available	931	Open in IMG/M
Ga0193428_101851	Not Available	904	Open in IMG/M
Ga0193428_102019	Not Available	868	Open in IMG/M
Ga0193428_102055	Not Available	861	Open in IMG/M
Ga0193428_102062	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	860	Open in IMG/M
Ga0193428_102219	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	828	Open in IMG/M
Ga0193428_102365	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	802	Open in IMG/M
Ga0193428_102811	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	739	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0193428_100590

All Organisms → Viruses → Predicted Viral

1566

Open in IMG/M

Ga0193428_100810

Not Available

1375

Open in IMG/M

Ga0193428_101752

Not Available

931

Open in IMG/M

Ga0193428_101851

Not Available

904

Open in IMG/M

Ga0193428_102019

Not Available

868

Open in IMG/M

Ga0193428_102055

Not Available

861

860

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

828

Open in IMG/M

Ga0193428_102365

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

802

Open in IMG/M

Ga0193428_102811

739

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193428_100590	Ga0193428_1005902	F004175	LIDVTLACEDANSKLVEVVTVADVDAEDNVGNSLLQIWELTFGSKAKLLFRL
Ga0193428_100810	Ga0193428_1008101	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVSVGRSWMSAKKWGPLAKL
Ga0193428_101752	Ga0193428_1017521	F090434	VSTDEKPYKFELFLPILLNKIYSDMNEYKMSVDHVPGDHLNIQTNGKKFKSFVIAKTGNNNERKIEINGKQLASGDYTLTDNSFKTKITLQNGDWLEPKVTWEGALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193428_101851	Ga0193428_1018511	F021918	EKFSQEKLDTRSTPYTMVWFSQPVRGLFPITRDITGQDEMIVSAWHTPGKELKIETNLPEVQSMKVTSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH
Ga0193428_102019	Ga0193428_1020191	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQMFDPVLVARSWVSAKNGVR
Ga0193428_102055	Ga0193428_1020551	F101008	HKDDRMALEMSVNTMVTPYTFHMNAPYFLPRFFNDINRKTIDATIMHEMGSKLEVKSNCPEFETFIITTTGNKRSVVLNGKELTVVDFQRGARRISQTTELPSGEHLTTTVEWTEDSLKKNQATITVEVTPNRKFEGIFGWDFQTLSTGNFHFDVKGENPWVGNYAIDRHANWEMNKPRYMFNWVGKSEFKTGPFSSFSPIDTKMNFVFNTRKMVLNADMVETMGGKQWGLKIHKNRFSILTGNAA
Ga0193428_102062	Ga0193428_1020621	F050387	MRHLICYRNDGASLGTPALAPRSPRPRTGRQQAAVTGGVDFSQATRTADGRLCVVKEESVETLAKDPVLECKHKDVEKCHYTYITFFKPAQEETCEENFEKSCQITFKQEAVKETIRKCYRPLEKVCNGQGAQECRTVYESSCSTRYIDQGQGKFVGDTKCEKQPVEICGAGCVSREGAEECHDKQVDTLVDVPEETCDLNPQKTCRLVTKLVPSLKPKQECTTVPQETCSLRFTQPKRLSKPLRTEWCL
Ga0193428_102219	Ga0193428_1022191	F023281	LAKYLEVLNMPDEFRELLDEYMDASERSLGQKECAEFFQCPYSLKESVKRNFSGNSL
Ga0193428_102365	Ga0193428_1023651	F008118	LVCLVTGAPYNEAESAPQTKSVSCRTEYAVVWDTKYQEKEQTECVTNYEKVCHTVTERLCKATTRQECQTVYEASCSTVYKSVCVDQYKTEYEPYTETECTTEYKEDCEFQWEGYGNNKVWAKIPGTCKQNPYDNCQDVTKTKEKQVAYPVCNDVPEQKCVDVPRQQCRQIPDQVCHNQPLQQCEDVPRQHCTTKHKKVPVRISKNVPKKVCDTGYTQTPTLIIEKSKPNTNLVKSNKIVFADN
Ga0193428_102753	Ga0193428_1027531	F075626	TCLTYEFTTDELGFKEITQLRQLPYSEKVGLDHEYKYTGKLYAANEAQPAKMNVRFPLNPIGAASFVVLDTDYSSYALICTCQEIDLFITTGHRRSCSILQRAVEEDEAITDKLIELLDSQVPDSSHDFDPIKQEGCEHGREKAWTIDPEKVIGGGVGSSVREAVDQIANEFEFKTAEQVKEEAEAALI
Ga0193428_102811	Ga0193428_1028112	F035783	ASKGKVKLSTEWKPTALISVINARTDLTDMEKVKLAAKAKMEGNLGDLLPKRFMASGSLKDKDEEERKLKFTDSQLQQREVKENVETNKKWNTVVFTDLPDDPSKKEVDMSKEKVSSLTKRFETKNMKDNEAYVIM
Ga0193428_103104	Ga0193428_1031041	F000048	RTGIKEFSPWLAECEKSVTGGLSKPSDLAEVKALNDKVTTYDKTCLNYIKVLEAAEAASKKMTTHAEADAEVAALKERYKKVKAVSEEWVKKVDTLMKEWVLLDNTVTELNSWVAKDKTSEGENQFSLEKMESTLGELKNIFKAKEKLVEGL
Ga0193428_103392	Ga0193428_1033922	F075646	MTFSPLIIWAKALFFFEQLFPVVARTWLGLKSERLFLGPKFRFLAQKSDFCHTTPILVDDPFLALGMTVNFPPWKPFFDFPFRSYSCFRKKIWLTAQKVFPPPTVGVPSASKSPSALSAQALRARALRARA
Ga0193428_103393	Ga0193428_1033931	F075646	MTFSPLIIWAKGLFFFEQLFPVVARTWLGLKSERLFLGPKFRFLAQKSDFCHTTPILVDDPFLALGMTVNFPPWKPFFDFPFRSYSCFRKKIWLTAQKVFPPPTVGVPSASKSPSALSAQALRARALRARA
Ga0193428_104037	Ga0193428_1040372	F004175	VSLTCEDGNSKLVEVVTVVDVDDEDRVGNSLLQIWELRSEDCS
Ga0193428_104252	Ga0193428_1042521	F100095	MNVCVDVYLKNCXLLMLTNEYEYNEFGTKAFYEKLKCLLTDVISYFVVFTYQDGNLVAQLVALFKFVAQMLAFCCFCCIFRRCHSKCLEVDQLFARIFICSFAAQVSCXYFSSTFGMVTFGTYISKSSYTIFTFHKFQINSRMNYSYDQR
Ga0193428_104396	Ga0193428_1043961	F000048	KVLETANAAAQKMTTHKEADAEVAAMRERYAKVKAVADEWVKKVDTLVKEWALLDNTVTELNAWVAKDKTSDGENQFSLEKMESTLGELKNIFKEKEKLVENL
Ga0193428_104663	Ga0193428_1046631	F002148	YMGSQGATFAEAVRMVVKSGGNWKRPVNRMYTYNFQIGENYYLPMTSYLEGKNSPAVSADLPGPLCFSERISLHPLSGTSVEAYADQSVETIKKTRQVISSM
Ga0193428_105281	Ga0193428_1052811	F004175	MDVALVCEDANSKLVEVVTVAHVDAEDHVGNSLLQIWELTFGPKAKLLFRV
Ga0193428_105438	Ga0193428_1054381	F001255	LTYAVPYVTYHAPKCETEFEEVKGQSCVTKPVTECNDVEVPSHKIVTEDVCQNVTTAECTHSTYSAGVYYGKREAEADPQVLVGAVPAVVPYHNCVNKVTEVCYPVQKVEPTTITEKSCLLKGEVECTEVVVATIPKVTCTHEEHTKPADDAAAVETE
Ga0193428_105510	Ga0193428_1055102	F004175	LVNFIDVTLACEDANSKLVDVVTVADDDRVGNNLLQIWKPRFGQKSKCLFRL
Ga0193428_105514	Ga0193428_1055141	F069653	TWGVKTRSPLRTLTYQIICLQSYLSISNNKTTIMKTAITTLLMILIVNPQFIDASPMPAPNNVECDIDPTLEGCNTSTEPTCQCNGHTSITHTGLKIGECNHDAGSGFFCYIDADQTECCEKESTRYTKYCVNYSACSNHPWTSLKTRGPVKH
Ga0193428_105669	Ga0193428_1056691	F000052	LVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECRTEVEEKCEDETSGYTTNTKCSKWPREVCSVSKKQVKKYTPITGCTKEPRELCAPAGCGFTQGEEECYDKQQTIVQDAPKENCSLEPQRTCKHVTKLVPKLTPTEECVDVPKEVCTRSRTNPRPVKKPVVKKWCYTPSA
Ga0193428_105865	Ga0193428_1058651	F000073	MGMTDEQKAALTLPGGKTAIPGNQLKLPKTFAAFMEEHADLRGLIDTGKGDLQWERDIPPAALANLEKLASGDFKGNLGKIIHDIYQTAHIMFSDMPQGDHKKRAKYRFASKTLMRILPAKEKAEVEGLIEKKTITLDLYEILGKCTWTPV
Ga0193428_105979	Ga0193428_1059791	F059627	PPAPVTAKKTRPSWDSFLAHSKVPQGHTDELLTWLAKVQQKKASVRANHRRDRDLRVEAMLEAARVSAQAELEAKQRSRLARWRGLHQDQLLSPPSSPEQEPEHEAADSALCDCESCVLCARHKSSMYGKCYCNMIFSPRPVFMDFTSPLSATDAFSDDTTSIEADNFLASL
Ga0193428_106050	Ga0193428_1060501	F000608	VVRARKEGASDNDVISLLGSNVDAESYEGDVCGDTLANTRCYAQMTKVKDEDLDSCGKSLVRKKWSDQAEETMGDYLCGQVHRWLKRNDDYKANGRDNIEMAFMYSECGNEWTEISSSIEGKLVPKEPLCCTNKGKFRRCDGSGQRESCAKK
Ga0193428_106358	Ga0193428_1063581	F094862	TYAESWMAAPYTLVKRSALPEPQNTRVGGNSNNPNTRFFTGNGALDAGLAGAAAGVAGQFIANQVFNPCTRGGTRNQNTNNRIFGGNTGNFLLGAAAGFAGASIANAAAGSPCGR

Showing 1 to 27 of 27 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019071: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences