3300019069: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003017 (ERX1782247-ERR1712239)

Overview

Basic Information

• IMG/M Taxon OID: 3300019069
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217155 | Ga0193507
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003017 (ERX1782247-ERR1712239)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15986129
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean: TARA_138
• Coordinates
  • Lat. (^o): 6.3363
  • Long. (^o): -103.0746
  • Alt. (m): N/A
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003184	Metatranscriptome	502	Y
F018374	Metagenome / Metatranscriptome	235	Y
F021918	Metatranscriptome	216	N
F032301	Metagenome / Metatranscriptome	180	N
F088751	Metagenome / Metatranscriptome	109	N
F091097	Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193507_1000442	Not Available	1486
Ga0193507_1000650	Not Available	1274
Ga0193507_1002750	Not Available	726
Ga0193507_1003198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	679
Ga0193507_1005965	Not Available	509
Ga0193507_1006044	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193507_1000442	Ga0193507_10004422	F088751	MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRALFSLNNFFRSWPEHGESPKVNAFFWAQNFSFWPKNPIFAIRPQFSLMTHF
Ga0193507_1000650	Ga0193507_10006501	F032301	LSPQQAGKKKMRVAMEIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKNLAGRNFDFRAKSS
Ga0193507_1002750	Ga0193507_10027501	F021918	DEMIVSAWHTPGKELKIETNLPEVQSMKITSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH
Ga0193507_1003198	Ga0193507_10031981	F018374	RSFSGVAARDQRQRGGDDTPVDFGSVAAARPGNDGKRCIDKVEMIEETEYDDVVQCDHSYDRRCHTTYVTNYESQQEEDCDENFRKNCFIEYEQIAFNETAKVCRTPLVKDCDIQGPEICRTEYESECWTKQEVHDVQDDVVACETVVEEKCQDNTSGYTTTTDCSKWPKEVCKVSKQNVKKYTPITGCTKEPRELCAPAGCGFKEGREECFDKTQTVVQDAPKEQ
Ga0193507_1005965	Ga0193507_10059651	F003184	HSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKTHNSKLADKQRKHLVMLEATDDEYNYHYKLFGQGAVDRDMKFYNPQLVQDYVNQIRRF
Ga0193507_1006044	Ga0193507_10060441	F091097	CAGSPTPATLTAAVDPFPVVISTGETITLSVSIDLAETVPVGTQVSLKIKREGIIDIPFPCLEIDGLHIGSCDYDGDYLLNTDSATDTLCPNYFPEGQACNLPLNPGMYGGDPPIVIEVPEIPDIIGGLLGSGTYYAEATLTTGGSTFACIYIRVELDH