3300019061: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782221-ERR1711986)

Overview

Basic Information

• IMG/M Taxon OID: 3300019061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217092 | Ga0193371
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782221-ERR1711986)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2934876
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean: TARA_122
• Coordinates
  • Lat. (^o): -9.006
  • Long. (^o): -139.206
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000276	Metatranscriptome	1390	Y
F000481	Metagenome / Metatranscriptome	1089	Y
F007564	Metatranscriptome	348	N
F009687	Metatranscriptome	314	Y
F019598	Metatranscriptome	228	Y
F033300	Metatranscriptome	177	Y
F076846	Metatranscriptome	117	N
F090434	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193371_100187	Not Available	988
Ga0193371_100238	Not Available	890
Ga0193371_100286	Not Available	824
Ga0193371_100335	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	775
Ga0193371_100432	Not Available	702
Ga0193371_100802	Not Available	544
Ga0193371_100842	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193371_100187	Ga0193371_1001871	F076846	TWGVKQQSVRPALRMKKSLSLLISLQLLVLSSAAQNEECPVGTSKFSGQSDVCVSLLDFCLGQGRVVRNDWCGERCVPPKIPDPNGEACRDDSEILRPVLMMTELKEMMETQLINLRERLSSRGLSGAIRDIEQIPSLAGLTNSRDQGITSELMTDALAKLYTVQDSDILLTTNFRFLKDQVKKRVGNIEEALHDTQSGKNRIRSALRNIRRLYRDFLSKIKDINDDIKVKQDTVTAALTKVAVFNEMLAGVKQNRRNLNKVQLTKDLFSKIKTTFVEVDNEWKKKGTQQAVDKTLDSLPGLINIGVSLFSSSTAHNEREIKDRIERSL
Ga0193371_100238	Ga0193371_1002381	F090434	VLLHKFHVKGEVKKDGQTAMKLLLSTDEKPYKFELFLPILLNKIYSDMNEYKMSVDHVPGDHLNIQTNGKKFKSFVIAKTGNNNERKIEINGKQLASGDYTLTDNSFKTKITLQNGDWLEPKVTWEGALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193371_100286	Ga0193371_1002861	F019598	IIGKLDSLPGFAQEGKDILKNSKLTEHIAEALKEAEKHILEMDTELRLMESEELQFEDNYFPAYNKAKGYLRETRQALRKLADKTVKEVRDLKLLLEELDQTDDPFLLKNAIESMKNLMIDTLKTLEEAVEKYNSALDTFEKLNSSIKTQNRKLDKLLDKNSAEYKEWTTNMRAGLYSTVAVSTISFILADVFGCLGFCSAGSLVASIAGIASAETGIAKYAAKLETWKSITERMLESGGNFDTTLTEAINILTDEIDLINNWTNSAEVVSNNI
Ga0193371_100335	Ga0193371_1003351	F000481	KHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKQKAQDRLQLLNETKSAFIGYAENSETIANEFDSAEEEIKKVKKIFNLDAANADLKKRQDLLKRSDETIHGLFDSINNNYKTMCITIPEDKKKILAKEIKAVEEKLEVVGRFKATVSKIEELVAALTAFDNSLKALDSWKDAATAELK
Ga0193371_100432	Ga0193371_1004321	F007564	QLYPYYGSYGMYGYPSYGYPMVQSPMVSAYPLAGYPSVGQRIAPYPMAGTRNLITLGNFLQLNGVFEQVATATTTVPATTVKGNFNIQQNGILDVFSGNEAKFTMYLMSSTDLTGKNVKIMFATGASCVAAIAATTTHKELAMVNVPPSINGFYISGTTKGFNIDGMNSKTALMGASNWLVLTESGSVIGCSKTALQ
Ga0193371_100717	Ga0193371_1007171	F009687	KTAASVLTTYLEDCHAVFAPCANQGCDWKFGPWGEDVFMQRCLDHHYVDKVEGWDLTTDGACAADRPEGEKKNKKWHAPDCSAVTTPAAHPFKKPEEYMRCMSGMTGQQFVA
Ga0193371_100802	Ga0193371_1008021	F033300	HGEKVLEGYFGNLEVTSAEGFKRFLEQMDSAYTNGCWRQTTEECKKGWKYGTWGEDLFMQRTMDDAEVSKISDFSLTTSGTCPGDRPKDKKDDTKYVPPCKAGETKAAVHPFRDVASWFKCLGTITGKQYS
Ga0193371_100842	Ga0193371_1008421	F000276	DTAYKCAVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGSQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC