3300018843: Metatranscriptome of marine microbial communities from Baltic Sea - LD3200M_ls1

Overview

Basic Information

• IMG/M Taxon OID: 3300018843
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214211 | Ga0188883
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - LD3200M_ls1
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121192165
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003289	Metagenome / Metatranscriptome	495	Y
F018020	Metagenome / Metatranscriptome	237	Y
F028371	Metagenome / Metatranscriptome	191	Y
F077370	Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188883_10006393	Not Available	928
Ga0188883_10006583	Not Available	915
Ga0188883_10008725	Not Available	794
Ga0188883_10008904	Not Available	786
Ga0188883_10015369	Not Available	600
Ga0188883_10018272	All Organisms → cellular organisms → Eukaryota	552
Ga0188883_10018592	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188883_10006393	Ga0188883_100063931	F077370	QNRDNNRRKILKQNSQQLAVPRPMSILGETIDRAIDILIDIYAVNSIGTPYYSFSTGTSIPVMTSNLTNAMILQFTEYSQLSTIYGLSKLKKIQLGFTRSSNLIGSTSKDLINTPSFFLQTSTIPYNTGSLSLQRAVAQSDNSVEVDLQTFEPKAWNIMMPPAIVSNNAANNQTYTFGSQTWVSTKLFNVQNYPDLFLNLGSLATPSFDASSPNSAFLVGQIHGRMQLSFAGPIVG
Ga0188883_10006583	Ga0188883_100065831	F077370	NNRRRILKQNSQQLAVPRPMSILGETIDRAIDILIDIYAVNSIGTPYYSFSTGTSIPIMTSNLTNSMILQFTEYSKLSTIYGLTKLKKIQLGFTRSSNLIGSTSKDLINTPSFFLQTSTIPYNTGSLSLQRAVAQSDNSVEVDLQTFEPKAWNIMMPPAIVSNNAANNQTYTFGSQTWVSTKLFNVQNYPDLFLNLGSLATPSFDASSPNSAFLVGQIHGRMQLSFAGPIVG
Ga0188883_10008725	Ga0188883_100087251	F077370	MSLLGETANRAIDILIDVYAINSLGVNFYSFSTGTSIPVITYNLTDSMILQFTEYSQLADLYGLSKLKKVQLGFTRASNLIGSNSSDLINTPSFFLQASTIPYNSGTVSLQRAIAQMDNSVEVDLQTFAPKAWSITLPPSIVSFNRSNQQTFTFGSETWISTRLNNTQYYPDLFLNLGALATPTFTTGSPSAAFLVGQIHGRMQLSFACPIVS
Ga0188883_10008904	Ga0188883_100089041	F028371	VVVNESVFISASNDGFNVSGLLDFSGTFNDLLLAEFNTVVSGVPLSEGSGVDLDDSTLDQSVGSDELVVGGVIDDHDDLGLSGDLFRSPGEVTSIESEGLEFVVSSSNSVSSDGLFTDLGEGRRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHYV
Ga0188883_10015369	Ga0188883_100153691	F003289	MXGNIVTEVALQTNFGVGFNNMQSDVLIHLTQXQYXWWFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTFRPHGKXGDLIICLIPISXCINIITNSSFILKMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNIGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQE
Ga0188883_10018272	Ga0188883_100182721	F018020	TVSDTFGLGTTEKVSIILSGYSSLTFEINKVPIPEPVPPPRE
Ga0188883_10018592	Ga0188883_100185921	F077370	KQDKQRQHRKKVLKTNSQQLAVPSPMSILGETVNRAVDILIDVYAVNSALGTAFYSFSNSSSAPNISSNITSSMILQFSEYSELVQIYGLTKLKKIQLGFTRASNYIGSASNVLANTPSFFLQASTIPYSAGSVLLQNKIAQSDNSVEVDLQTYSPKSWDIMLPPSIVSNNRANNQTFTFGS