Sample 3300018774

Basic Information
IMG/M Taxon OID	3300018774 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217189 \| Ga0193570
Sample Name	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0217189 | Ga0193570

Sample Name

Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	105540715
Sequencing Scaffolds	25
Novel Protein Genes	28
Associated Families	22

Dataset Contents

Total Genome Size

105540715

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	TARA_076
Coordinates	Lat. (^o)	-21.0073	Long. (^o)	-35.3344	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

TARA_076

Coordinates

Lat. (^o)

-21.0073

Long. (^o)

-35.3344

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000020	Metagenome / Metatranscriptome	6197	Y
F000787	Metagenome / Metatranscriptome	891	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001293	Metagenome / Metatranscriptome	729	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001608	Metatranscriptome	663	Y
F002742	Metatranscriptome	533	Y
F008360	Metatranscriptome	334	Y
F010164	Metagenome / Metatranscriptome	307	Y
F010543	Metagenome / Metatranscriptome	302	Y
F012124	Metagenome / Metatranscriptome	283	Y
F020014	Metagenome / Metatranscriptome	226	Y
F033767	Metagenome / Metatranscriptome	176	Y
F054056	Metagenome / Metatranscriptome	140	Y
F070902	Metatranscriptome	122	N
F071278	Metagenome / Metatranscriptome	122	N
F077350	Metagenome / Metatranscriptome	117	Y
F082867	Metagenome / Metatranscriptome	113	Y
F090440	Metagenome / Metatranscriptome	108	N
F090441	Metatranscriptome	108	N
F092118	Metagenome / Metatranscriptome	107	Y
F097403	Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193570_1002907	Not Available	1644	Open in IMG/M
Ga0193570_1002908	Not Available	1644	Open in IMG/M
Ga0193570_1009495	Not Available	963	Open in IMG/M
Ga0193570_1011661	Not Available	861	Open in IMG/M
Ga0193570_1012237	Not Available	839	Open in IMG/M
Ga0193570_1012646	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	824	Open in IMG/M
Ga0193570_1012736	Not Available	820	Open in IMG/M
Ga0193570_1013054	Not Available	808	Open in IMG/M
Ga0193570_1013374	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	798	Open in IMG/M
Ga0193570_1013557	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	792	Open in IMG/M
Ga0193570_1016694	Not Available	705	Open in IMG/M
Ga0193570_1017748	Not Available	681	Open in IMG/M
Ga0193570_1017809	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	680	Open in IMG/M
Ga0193570_1018784	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	659	Open in IMG/M
Ga0193570_1019375	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	648	Open in IMG/M
Ga0193570_1019733	All Organisms → cellular organisms → Eukaryota → Sar	641	Open in IMG/M
Ga0193570_1020313	All Organisms → cellular organisms → Eukaryota → Sar	630	Open in IMG/M
Ga0193570_1024237	Not Available	570	Open in IMG/M
Ga0193570_1024426	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	567	Open in IMG/M
Ga0193570_1025754	Not Available	551	Open in IMG/M
Ga0193570_1026258	All Organisms → cellular organisms → Eukaryota → Sar	545	Open in IMG/M
Ga0193570_1026587	Not Available	541	Open in IMG/M
Ga0193570_1026722	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	539	Open in IMG/M
Ga0193570_1026951	Not Available	536	Open in IMG/M
Ga0193570_1027767	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193570_1002907	Ga0193570_10029073	F077350	VIDSALANQIQKTETDPNQPDIQLLLEELEGKLRGALDVLSPSVKAMCDNLKEAASDIRTDKDATKLWGTLNDLQVFLSLVQQICTSVGTQGPKVVEFDNALGDALGTLETVVLDSEDADEVAAFVEKSLIGAFDKWGEAEAELRALTCM
Ga0193570_1002908	Ga0193570_10029083	F077350	VTDSALANQIQKTEADPNQTDIQALLEELENKLRGALDVLSPSVKAMCDNLHQAAVDIREDKDATMLWGTLNDLQVFLSLVQQICTSVGTQGASVVEFDNALGESLGTLETVVVDSEDPEEVAVFIEESLIRAFDKWPNAEAELRKIADV
Ga0193570_1009495	Ga0193570_10094951	F090441	LATLSFLDSLALGALITRRVIVGCQFPDAASYRKNDSDMFRSHSGT
Ga0193570_1011661	Ga0193570_10116611	F008360	MKTVFALSLACSAVSPIEKTIQLLGDLQAKIVKEGETESKLYEEFTDYCNDESKETQFAIKTGKSDSERAAATVADETAKIGAAEAKIEELSTTIATNEKDLAAATEIRDKEHADFVKMDADLAETIDMLGRAIGIIEREMAKHSFIQGDSMKKVTDALQGLLDAASVNSADKVKVQAMLQSQSEDQDQDLELQPAGAPDPAAYKSQSGGILATLEDMLEKAKAEHADAQKAEMNAKFDFDMLKQKLEDAVAVGNKELGETKTEKAAAV
Ga0193570_1012237	Ga0193570_10122372	F082867	GNKTNTHLLIKSSNSNLIERMPKKNRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNSLVLTVNESLTDLSTTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQIGTNPNNLPTTLEEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYSTRRSVSPPQDPDALTQGLMIFLTSTPATPIIAFMHVKYEFQTLEDPSFLANLFDKNKETDTLVVPRMTKQSPGGERKGAWN
Ga0193570_1012646	Ga0193570_10126462	F001145	MAWNVFSFFLNSEEAEAFIQLNTNFLETNVINILLLLGILIYANKTSFSVGLENRQKEIIQTIENAQKDVTNASNYYYLAEKGFTQSLFWLQSWKSLYEKDKIDIVNSKYNLVKKGLTETFNTTENLIKNFENKSFVSLQRYMILVTASRILRKFLFLSEGEQSKLIEVTISKLGGFKKX
Ga0193570_1012736	Ga0193570_10127361	F008360	ERSPMKGALAFLLTCAAVSPIEKTIQLLGDLQAKIVKEGETEAKLYEEFTDYCNDESKETQFAIKTGKSDSERAAATVADETAKIGAAEAKIEELSTTIATNEKDLAAATEIRDKEHADFVKMDADLAETIDMLGRAIGIIEREMAKHSFIQGDSMKKVTDALQGLLDAASVNSADKVKVQAMLQSQSEDQDQDLELQPAGAPDPAAYKSQSGGILATLEDMLEKAKAEHADAQKAEMNAKFDFDMLKQKLEDAVAVGNKELGETKTEKAAAV
Ga0193570_1013054	Ga0193570_10130541	F071278	MGLKKRLQFILKSTKGNALLLATAGAIAATFSVYFFVSITTLSDDSKQRVTHLYNAYQMAISVKGKINGDSVQKNYLDGESCEDDIEDVLDPLFHNGSFITLSEMMIANIIVVQDDPTTTAERGDKIPYDTANSGVLIKFANVSDEVIPPTAENRTNDERAGLARVHDLHLFVNLAGATDIDSRSNGPYTDGDPFFYIVMASDTDTGRTDGLTDDLKTVDLTQFPTGMLATNQGGLQAETSVILP
Ga0193570_1013374	Ga0193570_10133742	F010164	GLQSWKALYEKDKADLVTSKYKSVKKGLEDTFDTTETLIKNFENKAFVSLQRYMIFITASRILRKFLFLSETEQSKLIKSTISKLGGM
Ga0193570_1013557	Ga0193570_10135572	F001293	MIRNSLICKLINVQASMKENNEKKIKNEHETSKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0193570_1016694	Ga0193570_10166943	F020014	RPLIISSYSDEPRPEYAPKKNNTSKPPAASPPIVATIQRGTLPISLILIIKNKKGM
Ga0193570_1017748	Ga0193570_10177481	F070902	LLFATLLVSFAAAEYTPEVKSEQASIGNDDANVGPRAVIKTFVDLGRFIEAGEQQSAVIGFFAVDEENGIIGRNDTKSSYGVFREASTKNKDASFGIVKDKAIAAKCGIPRLPMVLTFHYDEDGKQYEIRKTQFFEDMTIYYSDDKTRRVGLLKKGETEEDFKFVSLAPKRPGKKAAAEPQV
Ga0193570_1017809	Ga0193570_10178091	F010543	PNERVGTAAGFLQLSACSQSGVSGAGLTCIPDHQYFATGMNGDEDLGEDIIMKGKPFHYNQQKPQQLFATGMNGDEDLGEDIIMKGKPFHYDQKPAANKLFATGMNGDEDLGEDIIMKGKPFHYNQQKPQRLFATGMNGDEDLGEDIIMKGKPFHYNQQKPQQLFATGMNGDEDLGEDIIMKGKPFHYDQKPAANKLFATGMNGDEDLGEDIIMKGKPFHYNQQKP
Ga0193570_1018784	Ga0193570_10187841	F001583	ASHLSDLTLTIVANIFXSLFNNIYKTYYIIFTNKHLNTDQLTRLMILHYFVPXYYLYLVKLHILFCHESXDTDSGETTYEDKSGSYVSWFYDAFLKEIQDAFYXTLYVFVYFFLHHFNGATVNYFFFERXNISELDEVRFYGVAPHXYFRPLMGILVISPTHYEGLMXMGLFFGLLSFMPVIYNCYNVFHKYVCTIPMQNSLLQTSTFIFFMMSLYCTA
Ga0193570_1019375	Ga0193570_10193751	F001583	PAFFXFHYIIALGISLSATHLSDLTLTIIANIFXSVFNNIYKTYYIIFTNKHLNVDQLTRLMILHYFTPFYYLYLVKLHILFCHETXDTDSGEQTYEDKSASYVSXFYDAFMKEIQDAXYXTLYVFVYFFLHHFNGATVNFFFFERXNIAELDEIRFYGVAPHXYFRPLMGILVISPTHYEGLMXMGLFFVLLAGMPIFYNXYNVFNKYVATIPM
Ga0193570_1019733	Ga0193570_10197331	F002742	LKGLICSRVRIYAMLLLVSLLVAAQAAAATTREDKNRPVTKVINLLKDMKAQLEKEAVEDEEVYEKVACWCETNDKSKTVAIANAEDKITSLTASIEEFTANSARLNTEIKNLEAEIAKNQAALDKATAIRQKELAEFNAEEKDMLQSIGALKSAVTVLSKHNSFAQVPSEQLLNIAAMLQWQFHKHRDVLAEMVTPAQHKAIAAFVQAPGDY
Ga0193570_1020313	Ga0193570_10203131	F097403	QREKENGAFTEESTESKANIAACKKAITAIEKGMAGSFLQSGAAAALRKLVDSRESMDQYTRSMLTEFLSTSTGYAPASGEIVGILKQLLEDMEKELADMTDEENAALAEFNALTAAKEKAIQTATEAIETKLERKGTIAVKIVNLKNDLADAQDALGEDQKFAAELKKGCSTAEADYEERKKGRAEEAVAVSETIKILNDDDALDLYK
Ga0193570_1024237	Ga0193570_10242371	F070902	PGGDDSQVGPRAVIKTFADLGRFIEAGEQQNAVIGFFAVDEENGIIGRNDTKSSYGVFREASTKNKDASFGIVKDKAIAVKCGIPRLPMVLTFHYDEDGKQYEIRKTQFFEDMTIYYSDDKTRRVGLLKKGEPDEDFKFISLAPKRPGKKAAAEPQV
Ga0193570_1024426	Ga0193570_10244261	F000787	GNILLFPTIIMKFFAIAALFGAVSAGTPPAVGLGHAYIPATREDYDNGKELWGADWAKYRAAHPNDQDCGISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLAPDH
Ga0193570_1024440	Ga0193570_10244402	F020014	VYKEDPRPEYAPKKNKTNKPRAASPPTVATIQSGTRPASLILTISLKYYFNNSLKV
Ga0193570_1025754	Ga0193570_10257541	F033767	VLTFYYISWNFFLILNDQVAWWFPVVTIALLIPLYIASGFFVNWFIKDTLSSRAKLTASIILSLVSIFLVALWNVIYYTAIYKRDEVFIGYGVSESQYQKFQKKYYLFKVLLESAILLALYAYFQCVIQTYKDALRKRKPEKEEKMDDMMEPKKD
Ga0193570_1026258	Ga0193570_10262582	F092118	MIIMNWHLSSFFLNNEEAFIQLNPNILETNVQNIIILFGVLIYANNVSFGPSLENRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKALYEKDKA
Ga0193570_1026375	Ga0193570_10263751	F054056	GEGALLWERYEAMETVGKTVTIVEGYKYLALGCVIGVGAWISGLALGDSAEKLLGFFDNYAQHTGTEASDGSTTDSAGTAIIYDLAFHFVTLLFSYTTISAIAIGAYAFGYTYLGQGDAAEALE
Ga0193570_1026587	Ga0193570_10265871	F001608	AEIAEIDAGQAEATKVRQEEHADYLKASKDFKDSAEAVAKAIAVLNDYYTSASFVQTKEAPEFGGANKDIGSTITSMLEVAESDFTKLLADAEADESSAQDAYDKLTQDNKVTKTTKQSDAKGKGAEVKQLEVALSNYKEDKQTLSSELDAVLNYLDKLKPQCESKVMSYAERKARREE
Ga0193570_1026722	Ga0193570_10267222	F010164	AEKGFTQSLFWLQSWKVLYEKDKIDLVTNKYNLVKNGLLETFTTTENLITNFEKKAFISLQRYIIFVTASRILRKFLFLSEEEQSKLIEVTISKLGGV
Ga0193570_1026951	Ga0193570_10269511	F090440	QSSLGGNEISGLKLATDLRLKRIYHCRVTDVGEDYVLRIIILKSIGG
Ga0193570_1027767	Ga0193570_10277671	F012124	GTPEYNNVQSNTTKVRVHLRNGVAEVFDQHQDLMGKVDNNIVEIETNFENKVEKLLFVLQDAVFIVSNKGLDVDSETDETGVYVYAKKVKEITSSLTVDSVSKEYEDKKSDLEAENLKLGVDEITDKAINSKIFMLKDEVQFLEKVVTVVKDLKA
Ga0193570_1029951	Ga0193570_10299511	F000020	GQTAVAQALTVLKEFYEKAAEATALLQGKQKPEVFDEPYTGMQSENGGVVGMLEVIQSDFARLETDTKAAEAEAQKAFDEFSSESAVNRAANAKDVEHKTTKKTNQEAALTAKKADLEGTQKELDAALAYYDKLKPSCVDAGVSYEDRVARRKEEIESLQEALRILN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018774: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences