3300018562: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000700 (ERX1782139-ERR1712148)

Overview

Basic Information

• IMG/M Taxon OID: 3300018562
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216983 | Ga0193150
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000700 (ERX1782139-ERR1712148)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28186267
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea: TARA_022
• Coordinates
  • Lat. (^o): 39.8607
  • Long. (^o): 17.4105
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F025213	Metatranscriptome	202	Y
F063744	Metatranscriptome	129	N
F088751	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193150_1000579	Not Available	1343
Ga0193150_1003569	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	722
Ga0193150_1006661	Not Available	570

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193150_1000579	Ga0193150_10005792	F088751	MPIFGPKCQFWAKFGRFWAPNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVRLQLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPP
Ga0193150_1001792	Ga0193150_10017921	F000021	KNNADKIIDLNGTKKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYFYIIVFAAYMRDAAAKAREAVDAEKKAAVALPASGKCSIPAKELKIEGSFVDFVAKVGGLHELIDTGKGNLQWERDIPPAALSNLEGLANSDFKSNLGKIIHDIYQTAHLMFADMPQGDHKKRAKYRFASKTLMRILPPAAKTEVEGLIEKKKISLDLYEILGVCTWVEPK
Ga0193150_1003569	Ga0193150_10035691	F025213	MEKTDAEKIMEEILSMQAGLNPDQQADANEEAEMIIRAIMQDEVDNSVYSKMADDLEAASKRVKKRKVKKVKESASEISA
Ga0193150_1006661	Ga0193150_10066611	F063744	SAAPQIVPYDHVEIAAEPYVHQEIPAEPYVHEEPELTPEALGIINRSQRPQAVPTAAPVVAPQQFAGPVQQFVPQQQQFAQFAAPQQFAQFAAPVQGVQGVWTGGCYNNLGEGVPCRQKF