3300018560: Metatranscriptome of marine microbial communities from Baltic Sea - GS678_3p0

Overview

Basic Information

• IMG/M Taxon OID: 3300018560
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214173 | Ga0188845
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS678_3p0
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15916975
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-7	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Alt. (m): N/A
  • Depth (m): 74

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000267	Metagenome / Metatranscriptome	1412	Y
F001293	Metagenome / Metatranscriptome	729	Y
F003289	Metagenome / Metatranscriptome	495	Y
F004023	Metagenome / Metatranscriptome	456	Y
F004408	Metagenome / Metatranscriptome	439	Y
F021267	Metagenome / Metatranscriptome	219	Y
F046392	Metagenome / Metatranscriptome	151	Y
F081083	Metagenome / Metatranscriptome	114	Y
F082266	Metagenome / Metatranscriptome	113	Y
F090050	Metagenome / Metatranscriptome	108	Y
F102126	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188845_100443	All Organisms → Viruses → Predicted Viral	1968
Ga0188845_100645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-7	1643
Ga0188845_100952	All Organisms → Viruses → Predicted Viral	1364
Ga0188845_102415	Not Available	833
Ga0188845_102981	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	734
Ga0188845_103869	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	636
Ga0188845_104181	Not Available	609
Ga0188845_104284	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	600
Ga0188845_104744	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188845_100443	Ga0188845_1004433	F102126	MGNKGKDVQLGKDAERFVNNPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQQEFYSDNY
Ga0188845_100645	Ga0188845_1006453	F090050	MIRSSKESIETVVTNIENSIDYYINQHTADLNGASRIRNDASIVRGLVEYRSALLDLLEEETPRKKRGNPNFGKDNPYFTKKEVNE
Ga0188845_100952	Ga0188845_1009522	F082266	MNNEYMTNMFIDMIQNAKKTFVDTWIKDEAMSVPMHAFIKAQTEFTKEVMKQTNLVANATGQAMARPAK
Ga0188845_102415	Ga0188845_1024152	F021267	MSLTDSQIKDLAKKMNIPLGGVFFKDELPPLEFNKFYMVNLEDSEDEQGNQNSGTHWTCLQFIKHPKGQIEKIYFDPYGVSPPEDVKKAVSEATGTKGLPYTEKDIQSLMNNACGWYCLAFGHFINSSTYRSGRLMDDVESFLAMFEDLNKSTDFKKNEYILKHFFRSEEPSLRKEIDVITEEDTPGGVDLMKIPIDVNNM
Ga0188845_102981	Ga0188845_1029811	F001293	MMRNSLICKLINVQASMKENNENKTKKEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0188845_103869	Ga0188845_1038691	F004023	THLSEITLTISANILHTFFAFKGKAYXXMFTDKQLNTDTMIRLAYGHYVAGFYMAYLGLIHGIDMHYDXKNETSFDGLDTEMAXXDEALSNELSHMMDVIFIFAVVCFFMYPEPEALSYEIFMXGDIGIVTDVRYYGVAPHXYFRPFMAXLMVCPHHKTGIFGLIFYFFILFYQPVLHGTSEQNNYNKRILLFLKQKFMKVSFFPASYLNL
Ga0188845_104181	Ga0188845_1041811	F081083	GGTINSLVTNGIAHIKSILILPFYSTTGVSSVQARSGVSVSSNTNIGTGIPVYQSPFDPAGTGCTSPLAHISNFNVQISGQNTIYNMQKYNFEQFNNQLYGQNAVNGGLTDGLTSSLIGRQEFDMEYCYYYINVERMLPVEMDVPKSVQVLGQNMSSKSVDYMVFVEYGNQVSIDILTGARV
Ga0188845_104284	Ga0188845_1042841	F004408	QVDSFYDLTNEEQETVKLYINEKSFFTSTDVLKFISEALSTKNETLETRVIRLMPENIKPIWNQLNESSRKSVLSQARLYPEEVLKTESQLEHFWNTRNLKTNESVTKKLVSHESLIQEDRLSENEMGSIMERFKNL
Ga0188845_104284	Ga0188845_1042842	F046392	MSHIRIDKNKAVKKWGPVLENMGVTNEERVDWLSEYAEFHSINENAYV
Ga0188845_104426	Ga0188845_1044261	F000267	ASSARLNTEIKNLEKEVAENQDALDKATAIRQKQLAEFNEEEKDNLEAISALKSAVTVLSKHNSFLQIPKNNMAAVATSVQEQMQKHASLLVGVLTHKERRAIASFIQAPEDYFDAEPTFKQSYAPQSGEIFGILKQMKETFENNLAASQKEEMANQKAYEDLKAAKEDEIAAGQAQIDSKTQELADTDEKNAQA
Ga0188845_104744	Ga0188845_1047441	F003289	NFNIGFSNTRADVLIHLTQWQYXXWFWFTFLXSLYYLLIAKITRFRTLKFRPRLATTTRPRGKXGDLIVCFIPISWCANILINSNFLLKLIEWQSESSLFTLRIRGRQXYXIYKFDLKNLTDILVTPKNIGRNKXSINFLGDLQTADDYLHILQIRSQNKXIKGYWADLLTKNSKTKKYNIVSPQEAY