3300018554: Metatranscriptome of marine microbial communities from Baltic Sea - GS676_3p0

Overview

Basic Information

• IMG/M Taxon OID: 3300018554
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214165 | Ga0188837
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS676_3p0
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5684704
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 62.09708
  • Long. (^o): 18.5427
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000051	Metagenome / Metatranscriptome	3266	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000797	Metatranscriptome	886	Y
F005781	Metagenome / Metatranscriptome	390	Y
F007527	Metagenome / Metatranscriptome	349	Y
F018374	Metagenome / Metatranscriptome	235	Y
F037503	Metagenome / Metatranscriptome	168	Y
F039170	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188837_100302	All Organisms → Viruses → Predicted Viral	1175
Ga0188837_101137	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	608
Ga0188837_101229	All Organisms → cellular organisms → Bacteria	585
Ga0188837_101313	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	569
Ga0188837_101384	Not Available	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188837_100302	Ga0188837_1003021	F000797	GDSMFCYTFYQVQRGRTPALSENPKELAILKHQKSNGLGIFACDAWKVFSDKLVDFGGVKTEPVLINADFTKYFRKDKPDRYLNTPLYMEAWKQIKAEGNYALYSWTVKADVPTVFLPNQLKKRLGDYPETASGTYIEACNKVLMGFFGNLEIVSKTGMQRFLEQFEAYYANNGKCWRWDTQECKKKWQYGPWGEDLFMQFCMDDAAVAKKEDFTLTDTGTCPGMRPKAEKDNMEFVPSCTDTGVSKFVAVHPLRNVSAWDACYKSISAR
Ga0188837_100387	Ga0188837_1003871	F000021	TTGCVAACLFREFQLAASYEGLVETVPGVNLDLLKMDRYKMDMTKDPLFRGEFEVIKELIAELPDGEASKRECDKVIDKNGPTKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKTKIMDNIHKYFYCICFAAYLREAAILSKDAASDEDKKAFSLTGGKVSTPADQLKMSKTFLKYMDEHSKLRTIVDEGKGKLQWERDIPAEALANLESLASTDFKGNLGKIIHDIYQTAHGLFKDLPQGDHKKRAKYRFASKTLMRVLPNDLKAEVEGLIANQTMTLDLYEILGQCTWGQAKA
Ga0188837_100477	Ga0188837_1004771	F039170	KGGDADLSLIDVCGVSGGDDSSCSRNPGQGYAYSVGDPHYRTWDNRHFDIQPHTYWGEIVLVQHKRMGGGDIEVQTATVPWFQNSWSESQHRHGGPKGNTGLAIAAWGNVIVFYARNQLNNYFLNGKQVTWHNHGWTTIAQGIKCAKSGRHYNFLIDKGTGYLRIWGNMVGSNNIDVYGHASGSWATGKSLTGAWADWNGNAGNDRAIINQLNARGKLSVLNTPRSYFKNKTPRVNTNGQFMLAFDMELDESQHRVIPGETITMDIQEPTKQCPKKAAIIAQNCKGVFGGALKDCGADICLGVNAAEAGKEAHRH
Ga0188837_100514	Ga0188837_1005141	F000021	QMDMTKDPLFRGEFEVIKELIAELPDGEASKRECDKVVDKNGPTKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKTKIMDNIHKYFYVICFAAYLREGAILCKDAASDDDKKAFSLTGGKVSTPADQLKLNKTFKAYMDEHSKLRTIVDEGKGKLQWERDIPAEALANLESLSSTDFKGNLGKIIHDIYQTAHGLFKDLPQGDHKKRAKYRFASKTLMRVLPNDLKTEVEGLISSKTMTLDLYEILGQCTWGQAKA
Ga0188837_100723	Ga0188837_1007231	F000051	AWKDKATSELDDIRNSSGNMLPEDRVARTMDLQEDIAAKCEILVKNAETEKELLPQGDKVPQDAQDFKDELTRITKYVTDLQAKTKAECDKYSEDVKFWAEYRTGIKEFTPWLGTSEKSCIEGLSKPSNLDEVKALNDKVNGFAKSCDNYLKVLMAADAAAKKMTTHVEADKEVAALKERFDKVKAVSDGWVSKVDTLLKEWTLLDNTVTELNQWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVDGL
Ga0188837_101137	Ga0188837_1011371	F005781	MAYTDLFNEAIDDLTASLTAVSGLRVVNDATKIVPNCVFIDAPSFTTVAGNGNVIRLEFPIRVIG
Ga0188837_101229	Ga0188837_1012291	F037503	PIGLGGFTAYQTLMNSEYRKIYPAVRQWVLRSIAERERTQTSS
Ga0188837_101254	Ga0188837_1012541	F000052	QQEEECEENFRKNCFINYEKIAFNETVQVCRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECETIQDEKCADETSGYTTLTKCSKWPREECKVTKKAVKKYTPITGCTKEPRELCAPAGCGFKEGAEECFDKTQTVVQDAPKEECSLEPQRTCAHVTKLVPKLEPSEECVDVPKEVCTRARTNPR
Ga0188837_101294	Ga0188837_1012941	F000075	FAAALIATVAANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0188837_101313	Ga0188837_1013131	F018374	HDAVAPASTRRLIPAQFTPARDNRQGSGDTDVSFPAVAAAGPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHITYVTNYESQQEEECEENFRKNCFIDYEKIAFNETVEICRTPLVKDCDIQGPEICRTEYESECWTKQEEHDVEDDVVTCTTVQDEKCADETSGYTTFTKCSKWPREVCNVEKK
Ga0188837_101384	Ga0188837_1013842	F007527	MRVFKSGTSNGLNTSIPLGGHTVPISTAGVKLEAKNAQKKAKKNITSDAMNNNIPYLRP