3300018551: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p8

Overview

Basic Information

• IMG/M Taxon OID: 3300018551
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214180 | Ga0188852
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p8
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6772759
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Alt. (m): N/A
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008184	Metagenome / Metatranscriptome	337	Y
F011255	Metagenome / Metatranscriptome	293	Y
F056178	Metagenome / Metatranscriptome	138	Y
F063493	Metagenome / Metatranscriptome	129	N
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188852_100561	Not Available	960
Ga0188852_100589	Not Available	941
Ga0188852_101154	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	704
Ga0188852_102167	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188852_100561	Ga0188852_1005611	F097458	PPIFLSFTFAALLPRRGIFALAHTHDISAIYKIPIDSRYGLLGSPILFDTHTLVVRRQSL
Ga0188852_100589	Ga0188852_1005891	F063493	MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRP
Ga0188852_101056	Ga0188852_1010562	F011255	MAVTHTWSVSDQLQTRTQDGLSEVVFSVVWRLNSEETVDGTTYKASSANQISLNTDNLDPATYTAFADLTKAQVVGWAKSTIDANAAEGQGVVCAEWEAGHNRNIAKQINPPTAVETAPWVTAAPV
Ga0188852_101154	Ga0188852_1011541	F008184	MAYTDLFNEAIDDLTASLTAVSGLRVVNDATKIVPNCVFIDAPSFTTMAGNGNVIRLEFPIRVIGSGPAGLPILRSILGIVASVLGSPIIVMAG
Ga0188852_102167	Ga0188852_1021673	F056178	MSGWHYQIMRHTADSGEDYLAIHEFYTMHDKGTGWTHKPVPIEADSLDEMREALTAILQDLERHGVRD