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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018549 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129055 | Gp0214160 | Ga0188832 |
| Sample Name | Metatranscriptome of marine microbial communities from Baltic Sea - GS675_0p8 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4713492 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra | 1 |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 62.09708 | Long. (o) | 18.5427 | Alt. (m) | N/A | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F002690 | Metatranscriptome | 536 | Y |
| F005089 | Metagenome / Metatranscriptome | 412 | Y |
| F005141 | Metatranscriptome | 410 | N |
| F022113 | Metagenome / Metatranscriptome | 216 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0188832_100123 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra | 1583 | Open in IMG/M |
| Ga0188832_100582 | Not Available | 811 | Open in IMG/M |
| Ga0188832_100693 | Not Available | 749 | Open in IMG/M |
| Ga0188832_101478 | Not Available | 518 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0188832_100123 | Ga0188832_1001231 | F002690 | CLETYRIGFHFNMFQSDASVTDDGLLEVSSPGARFSKKVVAAVCVGATILLAPVAIQLSHPSLQQRGTVTSVIQEEQFGSKMAECAATTENCFSNKCCKTTGYSCFLTGASTGKCAKACPAGSACNVVKPWYKALPAWTAGDSMFCYTFYQVQRGRTPALSENPKELAILKHQKSNGLGIFACDAWKVFSDKLVDFGGVKTEPVLINADFTKYFRKDKPDRYLNTPLYMEAWKQIKAEGNYALYSWTVKADVPTVFLPNQLKKRLGDYPETASGTYIEACNKVLMGFFGNLEIVSKTGMQRFLEQFEAYYANNGKCWRWDTQECKKKWQYGPWGEDLFMQFCMDDAAVAKKEDFTLTDTGTCPGMRPKAEKDNMEFVPSCTDTGVSKFVAVHPLRNVSAWDACYKSISAR |
| Ga0188832_100429 | Ga0188832_1004292 | F022113 | IRLTIGRHRGAKRMIREAQKNSDEMSEDVYWDRLDSANHLADECKARIQQIFNDTFGG |
| Ga0188832_100582 | Ga0188832_1005821 | F000344 | MRPKSTHAALSGVGEHPARESESAKWSAAGKERVANA |
| Ga0188832_100693 | Ga0188832_1006932 | F005089 | MNINDLFESIKLTEQLALENYQQRNGIVDYRLDGVCNHYFPQYDTLGDPSFKNGEIVLTCKVLKTVKGQLRYTFQVNGKRIAEKMIPSTFLSLGAFR |
| Ga0188832_101478 | Ga0188832_1014781 | F005141 | KGIKRPNTKNYVNLPVFLNVWQAVKADTNWKSFPWVVKADPSTVFIPQRLREIVGRQAVTESGVYMENCKYARMGYHGSLEVFSGLAFSTLLAQMEDCQTQLPIHNADHAHFREYGEDKFAAWCMHLKGVDKIPSRQQVDTIPEDSMIQGLHITVSCPGHRTKFERSMKKWH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |