3300018543: Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_0p8

Overview

Basic Information

• IMG/M Taxon OID: 3300018543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214148 | Ga0188820
• Sample Name: Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_0p8
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4141802
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS5 group	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden: Lake Tornetrask
• Coordinates
  • Lat. (^o): 68.355835
  • Long. (^o): 18.821667
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003182	Metagenome / Metatranscriptome	502	Y
F007749	Metagenome / Metatranscriptome	345	Y
F027191	Metagenome / Metatranscriptome	195	Y
F031485	Metagenome / Metatranscriptome	182	Y
F056178	Metagenome / Metatranscriptome	138	Y
F063493	Metagenome / Metatranscriptome	129	N
F066259	Metagenome / Metatranscriptome	127	Y
F087069	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188820_100316	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	998
Ga0188820_100344	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS5 group	966
Ga0188820_100491	Not Available	819
Ga0188820_100609	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	748
Ga0188820_100808	Not Available	650
Ga0188820_101382	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	509
Ga0188820_101395	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507
Ga0188820_101419	All Organisms → cellular organisms → Eukaryota → Sar	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188820_100316	Ga0188820_1003161	F007749	MTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLAIPRPQVA
Ga0188820_100344	Ga0188820_1003443	F031485	MAKIDKEVPTPGVGGSYLFDPKTGSLTLITESPAPTDNGTDSQEVPSSKD
Ga0188820_100491	Ga0188820_1004912	F063493	MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRPIVSR
Ga0188820_100609	Ga0188820_1006092	F003182	MHILEFDCSICLNLYGKAKQNHGLKKGKELTEHEWFAQCMSCGTFGIKIVDDARIGELSQ
Ga0188820_100646	Ga0188820_1006462	F087069	MRSKSMMGVQTVIPFKSKKTRQGTGLHSKPRKGKKKYRGQGK
Ga0188820_100808	Ga0188820_1008083	F056178	MSGWHYQIMRHTADSGEDYLAIHEFYTMHDKGTGWTHKPVPIEADSLDEMREALTAILQDLERHGVRDAKTGEVVQNG
Ga0188820_101382	Ga0188820_1013821	F007749	MTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLGIPRPAVA
Ga0188820_101395	Ga0188820_1013953	F066259	MAIEKGLYEMPEGIDGELMGEMGEEMTPDAMVGIDVVTEGDLPVMV
Ga0188820_101419	Ga0188820_1014191	F027191	VVRFLISPKKKKVKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQASNALSGCEKEEIPK