3300018535: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000200 (ERX1782124-ERR1711984)

Overview

Basic Information

• IMG/M Taxon OID: 3300018535
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216990 | Ga0193164
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000200 (ERX1782124-ERR1711984)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28811173
• Sequencing Scaffolds: 8
• Novel Protein Genes: 13
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1
Not Available	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea: TARA_025
• Coordinates
  • Lat. (^o): 39.3833
  • Long. (^o): 19.4183
  • Alt. (m): N/A
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F002829	Metagenome / Metatranscriptome	527	Y
F003503	Metatranscriptome	482	N
F004203	Metagenome / Metatranscriptome	448	Y
F006734	Metatranscriptome	365	Y
F012776	Metatranscriptome	277	Y
F022575	Metatranscriptome	213	Y
F037025	Metatranscriptome	168	Y
F041786	Metagenome / Metatranscriptome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193164_1001996	All Organisms → cellular organisms → Eukaryota → Opisthokonta	905
Ga0193164_1002700	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	805
Ga0193164_1004288	Not Available	671
Ga0193164_1004701	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	645
Ga0193164_1004768	Not Available	642
Ga0193164_1007535	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	528
Ga0193164_1007602	Not Available	526
Ga0193164_1008248	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193164_1001996	Ga0193164_10019962	F022575	LLKLALINSFKYNELKIVKTYDXMQATATSNINNKINLIIKITIIIADTFGPXEPNNVNNKCPATILAAKRIDKVIGRIMFLTVSIITMIGIKKEGVPNGTKXANKLLYXKIIENSIVPNQIGKANTRVIDKCLVLVKI
Ga0193164_1002700	Ga0193164_10027001	F041786	MGDGKIDAEAFRHSLMTFGNKFSASEVDEAFAEFKIDGDMIDAAHLKGLMVSK
Ga0193164_1003019	Ga0193164_10030191	F022575	MQATATSNNNNKYKLINKINKYIKVILDPXEPNNVNKRCPATILAANRIDKVNGRIIFLTDSITTITGIKNLGVPIGTKXQNKLLYXKIIDKIILPNHMGKAKFNVNDICLVLVKI
Ga0193164_1004036	Ga0193164_10040361	F000048	EGLSKPSSLDDVKALNEKVLAFDKNCVNYLKVLTSAQAAAQKMTAHADADAEVAGLKERFDKVKAVSDAWVKKCDILVKEWVLLDNTVVELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEDL
Ga0193164_1004288	Ga0193164_10042881	F004203	MGISDIDTFQSILAMAGSTNITWFIKKAVADKKSDAYAELYHCLLKMFVDADTNKDGLVSKASFSKLIDMAASIPRIYGYAPADAELYKTEEEKDKARQKMFLSMDLKSTGVITFDEWLKFCLEHILAKTATLDPHPILDHGNAEQYKTFIKAAVNVGTPENTELYWFLIELFTEADHNKNGIVTLSDFTAMFEKALETPRKLGLSHPEKGLFETDADKRMEV
Ga0193164_1004701	Ga0193164_10047011	F012776	DHSGLRTMIEEGRGKLEWERKIPDEKLSELKDLLSTPEFKANMPKIIKRIYELSWDMFGDLPRGHHKNNSMHKLASKTMIEILPENLATYVEKKCGALAGTPDFFDVIGQVSWYEPEA
Ga0193164_1004768	Ga0193164_10047681	F003503	GFRGPGLFFSPIEVDLACTAGSPLGAKLASAFETCLGGEEALKPEEVGVSERRRRRPNKGRKCPTVEQIKAKMGEGMEGDWCVLSQLGWIDENGNEKNETTAADLMSLNAEVLAELDESAMATCAQERVEMIGKMMEKKHKRCAKKFSEEDKAELTEMALKIQGYNCFKEMFHSACQKSVKNQIYAFFQAQAMAAASTDSPTTSAQVTTV
Ga0193164_1005040	Ga0193164_10050401	F000048	HGEVKALNDKVQAFDKNCVNYLKVLTSAQSAAQKMTAHADADAEVAGLKERFDKVKAVSDTWVKKCDVLVKEWVLLDNTVVELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVENL
Ga0193164_1005484	Ga0193164_10054841	F000048	MGDAAQKMTTHADADAEVAALRARFDKVNITKDEWVKKVDVLLKEWTLLDNTVTELNSWVVKDKTTEGENTFSLEKMESTLCELKNIFATKETLVSGL
Ga0193164_1007127	Ga0193164_10071271	F000048	TWGERYAKVKAVSDEWVVKVDILAKEWTLLDNTVCELNSWVAKDKTAEGENQFSLEKMESTLGELKNIFKEKEKLVENL
Ga0193164_1007535	Ga0193164_10075351	F002829	TWGVSKVDILAKEWTLLDNTVTELNSWVAKDKTAEGENQFSLEKMESTLGELKNIYKEKEKLVENL
Ga0193164_1007602	Ga0193164_10076021	F006734	LGIALSGPAPGYGHHGYHHPAPCLKEVETIKVTACKLVPDKTCSTETVKIGEKITGFEKGDCKEIEVCKLGYHGFHGYRGKRSAEADPGYVHAPCEKVTKEVCKSVPVKADINKDIESCTEVAKEVCEEVDKIVPKVTCKTATIKH
Ga0193164_1008248	Ga0193164_10082481	F037025	MSLDLYTRHVPLTQKAKFWGNFVSSLKGNADLCAAPEPRVTNWYPSITEVVPPTYPDLRQEFGKLESLQWRQGRGTTPVTPVLPDANYRIHTLGYDYCPVHTEIYGTYRNQAKRGY