Sample 3300018523

Basic Information
IMG/M Taxon OID	3300018523 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0216950 \| Ga0193088
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782163-ERR1712191)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0216950 | Ga0193088

Sample Name

Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782163-ERR1712191)

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	17985905
Sequencing Scaffolds	17
Novel Protein Genes	22
Associated Families	18

Dataset Contents

Total Genome Size

17985905

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	South Atlantic Ocean: TARA_083
Coordinates	Lat. (^o)	-54.3739	Long. (^o)	-65.1342	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

South Atlantic Ocean: TARA_083

Coordinates

Lat. (^o)

-54.3739

Long. (^o)

-65.1342

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000048	Metagenome / Metatranscriptome	3365	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F001255	Metatranscriptome	736	N
F004127	Metatranscriptome	451	Y
F005202	Metatranscriptome	408	N
F005379	Metatranscriptome	402	Y
F015056	Metagenome / Metatranscriptome	257	Y
F018668	Metagenome / Metatranscriptome	233	Y
F019431	Metatranscriptome	229	Y
F024947	Metatranscriptome	203	N
F026782	Metatranscriptome	196	Y
F030134	Metagenome / Metatranscriptome	186	Y
F040998	Metagenome / Metatranscriptome	160	Y
F050126	Metagenome / Metatranscriptome	145	Y
F065809	Metatranscriptome	127	N
F073014	Metatranscriptome	120	N
F100298	Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193088_102362	Not Available	1077	Open in IMG/M
Ga0193088_102543	Not Available	1050	Open in IMG/M
Ga0193088_104644	Not Available	853	Open in IMG/M
Ga0193088_105265	Not Available	807	Open in IMG/M
Ga0193088_105780	Not Available	774	Open in IMG/M
Ga0193088_107157	Not Available	698	Open in IMG/M
Ga0193088_107708	Not Available	673	Open in IMG/M
Ga0193088_107734	Not Available	672	Open in IMG/M
Ga0193088_109662	Not Available	595	Open in IMG/M
Ga0193088_110228	All Organisms → cellular organisms → Eukaryota → Opisthokonta	576	Open in IMG/M
Ga0193088_110237	Not Available	576	Open in IMG/M
Ga0193088_111056	Not Available	548	Open in IMG/M
Ga0193088_111158	Not Available	545	Open in IMG/M
Ga0193088_111748	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	527	Open in IMG/M
Ga0193088_111844	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	524	Open in IMG/M
Ga0193088_111926	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida	521	Open in IMG/M
Ga0193088_112252	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193088_102362	Ga0193088_1023621	F030134	LIIKSINSFRTKINKYKKDKIQPVLQRFKLRSCTFLIVEQTNYEYCYNTQEKIIQHRGSRHIYR
Ga0193088_102543	Ga0193088_1025431	F005202	MINQGNNMDKLKKMMAAMSMAMNQDNSEFSYVQPYSTNSGKSDSFMDKMKMMMMKMKMRSNYQNDDEQLFNEFFKSMGSSDRMDNYRTGSYRKNDPMSQFKQMFNSYRSKRQATDSLDLGDRLVEKLAQQKHQMEAKIGNMTCVLKETNVLDASNNLDIQTMKSDMQQYTMPSPWFGQKYEQILDTCYEMATNLPAEIADNSVVSGSFGTVKLGEVKMFNKCCEKAETKLCMNQDIKTKVESNFGPMEELLQQTQLTEAEFFPLVMQLLHGQEMDYMFGSM
Ga0193088_103418	Ga0193088_1034181	F000021	ELLKMDTYKMNPEKDPLFRGEFEVVKELVATLKNGEAAKNVCDKVIDKNGTPKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYYYLIVFGGYMLEAAELARNAVPDDIKAEVTLKGGKCAIPANQLKLVKSFVQFVEENASLRGLIDSGKGNLQWERDIPQAALANLEALAAKDFKGNLGTIIHDIYQTAHVMFGDMPQGDHKKRAKYRFASKTLMRLLPANLKSEIETLIETKKMTLDLYEILGHCTWTAPKPT
Ga0193088_104063	Ga0193088_1040632	F000021	IKQLRENIAESKLSYEIMDDAAQAFLKTKIMDNIHKYFYLICFAAYLREAAILAKDQASEDDKKNFSLTGGKVSTPADQLKLAKTFEAYMTEHSKLRTIVDEGKGKLQWERDIPAEALANLESLAASDFKGNLGKIIHDIYQTAHGLFKDLPQGDHKKRAKYRFASKTLMRVLPAALKTEVEGLIASKTMTLDLYEILGQCTWGQAKA
Ga0193088_104644	Ga0193088_1046441	F040998	VLDVGLAGSVQESFDDNGVVHLVSDSLAGDFGWENAVFQDSLVDNFDTSTDWSFLLVATGAGGFGFLGHDFPGADDQNVFAGEFLFEFSDDFGLDFLPSGNLWGWDHQDQSVSSADIDFFDGADVKLHELFLGGGIGTVLDFENGLGDVVLDVGGSLVVFLLEFGGDGSKNHVRRVFGVSVSST
Ga0193088_105265	Ga0193088_1052652	F040998	VLDVGLAGSVQESFDDNGVVHLVSDSLAGDFGWENAVFQDSLVDNFDTSTDWSFLLVATGAGGFGFLGHDFPGADDQNVFAGEFLFEFSDDFGLDFLPSGNLWGWDHQDQSVSSADIDFFDGADVKLHELFLGGGIGTVLDFENGLGDVVLDVGGSLVVFLLEFGGDGSKNHVRRV
Ga0193088_105780	Ga0193088_1057801	F073014	MATDGYQNKEFSKNEPWYRQSSVGFNSNYNAKTTGQIYADQYASQYERNGKHSSDYRGANHFDSDFSQRSFWGAKTMNTPEGAVFHPRMSNQGITDKTSSNMGCHIKHQKFLMCALNLNQRAAVAQCRTEFRDYRDCQSDFTTGGNKSSKTYYQDLLKSVSRAQGDYWLDLTSRDYAKFASYSFEHRPNVGVNGNFQPGFMNSEKMAFDKYLGK
Ga0193088_107157	Ga0193088_1071572	F005379	VKADVPTVFLPGLLKDRLAQFPETPTGTYVETCNKVLMGYFGNLEVTSKTGMKRFLEQFEGYYANGGKCWRWDTADCKSAWKYGPWGEDLFMQRTMDDAEVMKKSDFTLTDTGTCPGMRPKADKESTDFVPSCDAAYKFVAVHPFRNLTAWQTCYDTFSKRQ
Ga0193088_107206	Ga0193088_1072061	F000052	EENFRKNCFINYEKIAFNETVEVCRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECETIQDEKCEDETSGYTTFTKCSKWPREVCNVQKKAVKKYTPITGCTKEPRELCAPAGCGFKEGAEECYEKTQTVVQDAPKEECSLEPQRTCAHVTKLVPKLEPTEECVDVPKEVCTRSKSNPRKVKKPVVKKWCYVPSEESGLA
Ga0193088_107656	Ga0193088_1076561	F065809	VHGRTSWNLLGGYIEFDMDVCGAQVGVNNNFYTISPQGGPSSGYCDIQTNDSPICMELDIIENNGNCLGQTTWHVWGNKDGGCDQNGCYGQYHFDDGCQFHMRTEFGEDGSMTQYKNGQVIEVNGGPSEDEKNQIKQNMEDTGAAIASTQWTGWVPDDGSCGGSDSNGAQFAVTNVVVHAPQGIKFGPPPPTCAEPSPFSSAASV
Ga0193088_107708	Ga0193088_1077081	F015056	VHTWLKLDLSDVQDLALAADEFDDSLVDSHLVSIPGFGTFTTWSFSGGDPHSPGWHWSWSFDLDKTVVASAVDGLCSGADFSARLVDGFWALGRDGDSDVGFFDWGGGDFVVFLEIGHGNSIKVICKFDLRL
Ga0193088_107734	Ga0193088_1077341	F015056	VHTWFQLDLGDVQDLALAADEFDDSLVDSHLVSIPGFGTFTTWSFSGGDPHSPGWHWSWSFDLDKTVVASAVDGLCSGADFSARLVDGFWALGRDGDSDVGFFDWGGGDFVVFLEIGHGNSIKVICKFDLRL
Ga0193088_108488	Ga0193088_1084881	F000048	ALNEKVAAFAKSCENYFKVLMSADAAAKKMTTHDEADKEVATLKGRFDKVKAVSMEWTAKVDTLLKEWQLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVDGL
Ga0193088_109662	Ga0193088_1096621	F100298	LGGLDDITVTSIGNAEAADSKVFTASGTEFDVVSGVVVDTGFAQHSVVLDFGSSESWGVRAQDDEFTFGSSELSEGLSVAEAVFTGLHDQLKSGVDGFGGVSFLRHIECR
Ga0193088_110228	Ga0193088_1102281	F018668	HQTIKMAFFKSLLIASVAAVAFAAPQGEGKNTEVGVKSQSSAPKCGNGQKIACCNSGDDLIGLNCLSIPILAIPIQQACGSNVAACCQTGDAEGNLINLEANCIAIPL
Ga0193088_110237	Ga0193088_1102371	F019431	PPPPSDKPKPLWFVPDGPATKENCNTEGEAVLAGSKPVFESPTSEIFVPEGKGTDICIFFAPPQPQEWQLGKGVSYNSKSCSEGCCFYTPASSKRVQEIEAEVEKNLPTWFRTPAGGCDAVPSNTITSRLILNEDSNDSGNEAALCVKAKDKDTFELLTGETTSCKGKCCVFNCKSCKAPES
Ga0193088_111056	Ga0193088_1110561	F026782	MIFKFERKIKTKLPHKNNNKCLHEIFAMIRTERLIGRAILLTNSIKTKTGTKIGGDLGGVKFISINITLKLKVKIKIENQNLKELINIKIVPVIGTLKGNNPTKFKTTKINLVYCKPNLKVSFFVYKI
Ga0193088_111158	Ga0193088_1111581	F001255	SLPYVTYHAPTCKTEFEQVKGQSCVTKPVTECNEVEVPSHKIITEDVCQNVTTAECTHSPVTTLPAPAGVYYGKREAEADPQYLVGAIPAVVPYHNCVNKVTQVCYPVQKVEPTTITEQSCLLKGEVECTEVVVATIPRVTCSHAEHTKPADEAVETE
Ga0193088_111748	Ga0193088_1117481	F050126	MQLKVRKIELCECLAVGDSEEDVLHSLGSLGENVGEVLLGEGAVTAVLSDEGSEGGSDLVVELAEVLLVEDEGLIFFVDILGAWEGGVDLLNISEDLVNPLRGSGDVLVGGGGVVVGKIDEGIGVASDLLKSLDGVLDLSGGGNSDEGGGELHF
Ga0193088_111844	Ga0193088_1118441	F050126	RIFLLFLSMQLKVRKIELCECLAVGDSEEDVLHSLGSLGENVGEVLLGEGAVTAVLSDEGSEGGSDLVVELAEVLLVEDEGLIFFVDILGAWEAGVDLLNISEDLVNPCRGSGDVLVGGGGVVVGKIKKGIGVASDLLKSLDGVLDLSGGGNNDEGGGELHFFIIFFKFQTSPC
Ga0193088_111926	Ga0193088_1119261	F004127	VLFCEMRFLLAALVLVAGAWAQDTYNCPDGWMLEEDRSGCRCFMLSGGESVTRDDADILCAFHEAWVAELDHPGINYWLKSQLLAITEPGDWNQFWLGAKTTGRHDANHNNGEWLWQHRNATVDWFDWGNGQPNDWHNENCLVLREYHSFLFPNQRDYYWNDYFCDD
Ga0193088_112252	Ga0193088_1122521	F024947	FFAGWKKPFPTQDVQSINITKIQRDNLDNPQGPFCDPFEGSIHKSDFVPTKGTGTKVDPFIIPARNEFRMMWENVDMYGDFRPFKCWWLYEEGDGFTENSMMRSPFSGRYFKLAYDPTDYYGVDQVDMHSHAASQY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018523: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782163-ERR1712191)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences