3300018519: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000759 (ERX1782467-ERR1711905)

Overview

Basic Information

• IMG/M Taxon OID: 3300018519
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216975 | Ga0193135
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000759 (ERX1782467-ERR1711905)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17968596
• Sequencing Scaffolds: 14
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	2
Not Available	7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea: TARA_020
• Coordinates
  • Lat. (^o): 34.4064
  • Long. (^o): 15.043
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000067	Metagenome / Metatranscriptome	2732	Y
F000108	Metatranscriptome	2213	Y
F000287	Metatranscriptome	1370	Y
F002829	Metagenome / Metatranscriptome	527	Y
F004498	Metagenome / Metatranscriptome	435	Y
F005379	Metatranscriptome	402	Y
F007155	Metatranscriptome	356	Y
F008676	Metatranscriptome	329	Y
F017830	Metagenome / Metatranscriptome	238	Y
F022575	Metatranscriptome	213	Y
F032920	Metatranscriptome	178	N
F035598	Metagenome / Metatranscriptome	171	N
F046159	Metatranscriptome	151	N
F048077	Metatranscriptome	148	N
F059045	Metagenome / Metatranscriptome	134	Y
F059484	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193135_1003145	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	669
Ga0193135_1003539	Not Available	635
Ga0193135_1003680	Not Available	624
Ga0193135_1003798	Not Available	616
Ga0193135_1003914	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	607
Ga0193135_1003938	Not Available	605
Ga0193135_1004158	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	592
Ga0193135_1004937	Not Available	546
Ga0193135_1004943	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	546
Ga0193135_1004990	Not Available	544
Ga0193135_1005297	All Organisms → cellular organisms → Eukaryota → Opisthokonta	530
Ga0193135_1005429	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	524
Ga0193135_1005785	Not Available	510
Ga0193135_1005862	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193135_1003145	Ga0193135_10031451	F000287	AYDYNQDVGGNYYQPMLQYLNQKETYGLFHTRQDVYLPERAEICSNKYTNLRYGDKSSASHNLDQFLENAYSKQIKELNGSTAMIRVKLMKDIVTDRRKPHSPLDNNNTSFNSVRLLKGSPLGQEAVNHYISELSIEKKHRKKDAEKRRKHLVKIEAFDDEFEYHHKLFGDGAVNRDEKFHNPQKVLDYVNQIRRV
Ga0193135_1003539	Ga0193135_10035391	F046159	TWGQTVLVSHQRIIMKGLILLAIVAAASAAPSCDDCKAAVAGFKERLLTPESLAEQQAILTLAACPQAPDPAQCEQWVATYWAGIAEVLFTWLTDVKDPCGSLGLGLCKKGFTCDECLGALDFLGGVMVDESYISEATTYLQGPAYCGNGGEHTPDCESAIAQAIPVAMQVLSEAIPAQGETLCQDVLGVC
Ga0193135_1003680	Ga0193135_10036802	F005379	AQFPETPTGTYVETCNKVLMGYFGNLEVTSKTGMKRFLEQFESYYVNGGKCWKWDTPACKKQWKYGPWGEDLFMQRAMDDAEVMKKSDFTLTDTGTCPGMRPKADKKNTDFVPSCKQEGVYKFVAVHPMRNVTAWTDCYKTFSART
Ga0193135_1003681	Ga0193135_10036811	F000108	QRCFTGKDRVCDTTYKIDMTTKDDYQCTNVETPNCYMEEKVINDVTCTNSVEFNCKRDKSTKNDGYGPKGVVCDRKPTQSCYNIPRKIQVEVCKTDVHRYCEKFSNIFPFPVEEQNCHFEPKKICELEMKTRPKKAKKYSYTKDCKEQPREICDQCEKKSIQPLCDTQERLVCTYEPVETCNDVDKQYCHKVEKVVLEEECDMKFDT
Ga0193135_1003798	Ga0193135_10037981	F059484	MKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDHVLVARSWVSATKWGPLAK
Ga0193135_1003875	Ga0193135_10038751	F000067	VTKPFNNCTGVIETNIERVCFDVNELVCDLVEAIHYETLEETYQVQRCFTGKDRVCDTTYKIDMITKDDYQCTDVETPNCYMEEKVINDVTCLNSVEFNCKRDKSTKNDGYGPKGVVCSQKPTQSCYNIPRKIQVEVCKTDVHRYCEKFSNIFPFPVEEQNCHFEPKKICELGMKTRPKKAKKYSYTKDCKEQPREICDQCEK
Ga0193135_1003914	Ga0193135_10039141	F017830	GIATHDNKKALLSIRKNGEEIASIFDQNHKDNHKNSMAGQNIIMDVKRGDEIVVYAYTGTWLADFPMNHYTHWVGLLLKPSEEEIESLRKAAEEV
Ga0193135_1003938	Ga0193135_10039381	F035598	HGVFFPTIKRSRGELTLDFHDLVLAVVLGIAALVTPAFIYRITSPMSSIELEHENMETA
Ga0193135_1004118	Ga0193135_10041181	F000048	TSAQGAAQKMTTHAEADAEVAGLKTRFDAVKVVSDTWVKKCDVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193135_1004158	Ga0193135_10041581	F059045	ANLGDEIPKDDVQKLFAELCDPEDEDGFFPYMPFVDRLCGKA
Ga0193135_1004371	Ga0193135_10043711	F000048	KMTTHGEADAEVAALKERYAKVKAVSDEWVKKVDVLLKEWALLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVEGL
Ga0193135_1004937	Ga0193135_10049371	F032920	GVGKISHKTLLGWNINMLRKAFVDVKVIGSGTELLGDYEVFRHLNWNIVNLKNIDVEWTGKVMITGLKVFKTPMVSEGKLLFKDFVVDMKMVEKLMDVPYTLIFKSHPLTVALLPFFQYP
Ga0193135_1004943	Ga0193135_10049431	F008676	GGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTASVMNTRMRHETHNTDLHPTPTSKLIRDHYIKLVKNLALRDEVDLPPLLC
Ga0193135_1004990	Ga0193135_10049901	F048077	GAPQLLTGYGYGLGAIHAVPSVAKQTITYKTAAFEPVEADTPADTELLEIKETEHSIDTLVPGPVTYHHTPAVYGYGLHGGILAAPTVEVKEVELPKIELPTTYATHGLLGYPYGLGLGLHGLPVLAAPAAPAAEAEAEE
Ga0193135_1005297	Ga0193135_10052971	F022575	FYFKIFLLKLILINSFKYNELKIVKTYDXMQATATSNINNKINLIIKITIIIADTFGPXEPNNVNNKCPATILAAKRIDKVIGRIMFLTVSIITMIGIKKEGVPNGTKXANKLLYXKIIENSIVPNQIGKANTRVIDKCLVLVKI
Ga0193135_1005429	Ga0193135_10054291	F004498	GLVPGEEVCHDKQQTLVQDTPVEQCNLEPQRTCKHVTKLVPKLEPTEECVDVPKEVCTRSRTNPRPVKKPVVKKWCYVPSEESGLA
Ga0193135_1005785	Ga0193135_10057851	F007155	VNTFNKSKEDFIWFVKKATTDKKSYSHSELYHSLLKMFVDADTNKDGLVSRASFSNLIDEAAAMPRAYGYAPSDADLWKNQQDKDASRQKMFDSMDLKATGVITFDEWLKFCNEHILAKTKTMEAHPMIDSGDAGQYKAFIKAALGKVAGPQHVELYWYMLEIFTDHDT
Ga0193135_1005862	Ga0193135_10058621	F002829	VSDEWVKKVDILLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVENL