3300018517: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002366 (ERX1782329-ERR1712120)

Overview

Basic Information

• IMG/M Taxon OID: 3300018517
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217125 | Ga0193451
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002366 (ERX1782329-ERR1712120)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14646571
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean: TARA_131
• Coordinates
  • Lat. (^o): 22.7478
  • Long. (^o): -158.0513
  • Alt. (m): N/A
  • Depth (m): 110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000108	Metatranscriptome	2213	Y
F000235	Metatranscriptome	1500	Y
F032920	Metatranscriptome	178	N
F048077	Metatranscriptome	148	N
F059484	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193451_104630	Not Available	571
Ga0193451_104762	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	563
Ga0193451_104900	Not Available	555
Ga0193451_105799	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193451_104630	Ga0193451_1046302	F059484	LWVHEPDTFFLEAAREISEKWNFFVKRSVPENFQRENFSGQVPTESLRTQDSEYVYERWVQQIFDPVLVARSWVSATKWGPLAKL
Ga0193451_104762	Ga0193451_1047621	F000235	HGALSRVSTMFLYVLLLLPLVLAKQLEPYQQELVDKFGEENVSFDKNVRTAFCDQCMEIIVESSGGAQEHQSNRLGRFKRDGSLWENMVPFWTSDNKQHITPDPMSNPIIYFVKWVISETVGGFNAGIMNDEYTDGINCPYEIPDQWQYEFQRQWFVDPTLRVRCSKFREN
Ga0193451_104900	Ga0193451_1049001	F048077	LGAIHAVPSVAKQTITYKTAAFEPVEADTPADTELLEIKETEHSIDTLVPGPVTYHHTPAVYGYGLHGGILAAPTVEVKEVELPKIELPTTYATHGLLGYPYGLGLGLHGLPVLAAPAAPAPEAEAEE
Ga0193451_105546	Ga0193451_1055461	F000108	EFNCKRDKSTKNDGYGPKGVVCARKPTQNCYNIPRKIQVEVCKTDVHRYCEKFSNIFPFPVEEQNCHFEPKKICELEMKTRPKKAKKYSYTKDCKEQPREICDQCEKKSLRPVCEMQERLECVYNPVEKCRDEPKEYCHKVEEVVLEEVCDMKFDTSYL
Ga0193451_105799	Ga0193451_1057991	F032920	FGFPVVKVALRADEVKITTIIPKLPEIEVAFLTNGIKITAIIPDLPEIAAAVTLKTFSLFQNTLGIQILVGKMSHKTLFGWNFNMLKKAFVDVKLIGSGIELIGDYEVFHHLNWNIVGLENIDVEWTGKVLCPGVKLFKTPMVTEGKLLFKNFVLDIKMVEKLMDVPYT