3300018516: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001516 (ERX1782107-ERR1711891)

Overview

Basic Information

• IMG/M Taxon OID: 3300018516
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216875 | Ga0192940
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001516 (ERX1782107-ERR1711891)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15452502
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean: TARA_078
• Coordinates
  • Lat. (^o): -30.052
  • Long. (^o): -43.2619
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F001636	Metatranscriptome	659	Y
F032922	Metatranscriptome	178	N
F059507	Metatranscriptome	133	N
F086382	Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0192940_1000149	Not Available	1806
Ga0192940_1000366	Not Available	1408
Ga0192940_1001084	Not Available	992
Ga0192940_1001924	Not Available	786
Ga0192940_1002923	Not Available	660

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0192940_1000095	Ga0192940_10000951	F000039	MRHSKMAEWMENVEKSIARIMADKVYTSAEFKRERDTFNSLCKDLERTEVKKWLAQILEILMAERAKDQKKTENDKLDALIQKHEELIPNVQKTSVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCIENVDELIERQEKSLSQLDAKKSIVTDLIAKGKVILQNPDKPKFLEGNVKRIEEGWDDTKKKAQDRLQLLNETKDAFIGYAENNETIASEFEVAEEEIKKVKKMFNLEAANADLKKRQDLLKKSTDTINGLFDSINANMATMSITIPEDKKKTLTKEIAAVKDKLEVNGRFASTVKKIEDLVADLTAFDNSLKAIDSWKDAATAELTDIKEASGAMLPEDRVARTMDLQEDIAAKLEILKQCAATEQALLPQGDKVPADAQVFKDELARITKYVTELQANTKIECDKYSNDVKFWAEYRTGIKEFTPWLVGAEKAAGEGLSKPSDLAEVKALNDKVLAFDKNCVNYLKVLTSAQGAAQKMTTHAEADAEVAGLKTRFDAVKVVSDTWVKKCDVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0192940_1000149	Ga0192940_10001492	F001636	MSTLNYAWNVRGTLNGDFMSASGTTASVDGIADVHGTAGEGAPFNHSTWIWGGLGHYGLAWFQGGHKENPTEKYPFHMTRHWYGEDGSHIWSSHTVTGAEGAWAGDIACVAEHFVPGGPILGGYIRGQWPSHWVATKRSDREVDVHGIVTLKVEGGGTYTAHVHEYIKFWEPCVTINRHFWKVHYLEAEYYPTHWYHKEKAICDPNWNWGATGTEKMTFAWHLFGTIGNKCIDADGYGYGAGYRQHHWGKGGKGWGEHGLPNLNWALAWEGHAGMHFFTRFPKGVVNPFNLSLPEGFTIERKWWGQDGAHWATTHDVKFDGAGFNKEIVLVGDGFKTGSLMLWDGNKEKGNWIVKAWPQYALAVPKGNDHIWYRSTFQFELNNGAYYSGYWEMDIHFRKALQPGQMPDPYVVKFWPETWDSKPHYWHFYEREEVEQSTYDKGDNSW
Ga0192940_1000366	Ga0192940_10003661	F032922	VLLLASYALAHGGDNYHMFKTWSKTKAMESCWGEDNMKIYTVNMKKAIAKCNQVDAPELELPPYRSVDRFVNVMLSFARQMESNQFDQLYKMMSVINENQYDRRHNDYTYSRPERYGYENKMDNFQMMMKFKKMMNNMRNDDSFMNNDMMSFDWMKNKYNNKYGMNERMDMDKFEKMYDMVKSMKHQSSDYSMQADHQAPIAAFRSVMNFDNNNQKSMDFNKMANFFKNFRSKRQAAGDALALNDRLKEKIQHVFEEQQSKIGNMTCVLREMNCLNAENEIDIRAMKKDSEQYNMPSVWFKNRYEEILDTCHEVATNLPEKLNKQEIVSGEFGTVNMGQIKSFMSCCKNAKQKLCMNQDIKNKIESNFGPVDEILESFNYQITEDQLFTQVNQLLQGSEDEYM
Ga0192940_1001084	Ga0192940_10010841	F032922	VLLLASYALAHGGDNYHMFKTWSKTKAMESCWGEDNMKIYTVNMKKAIAKCNQVDAPELELPPYRSVDRFVNVMLSFARQMESNQFDQLYKMMSVINENQYDRRHNDYTYSRPERYGYENKMDNFQMMMKFKKMMNNMRNDDSFMNNDMMSFDWMKNKYNNKYGMNERMDMDKFEKMYDMVKSMKHQSSDYSMQADHQAPIAAFRSVMNFDNNNQKSMDFNKMANFFKNFRSKRQAAGDALALNDRLKEKIQHVFEEQQSKIGNMTCVLKEMNCLNAENEIDVRAMKKDSEQYNMPSVWFKNRYEEILDTCHEVATNLPEKLNKQEIVSG
Ga0192940_1001924	Ga0192940_10019242	F059507	MQFLVLILSVSLAYGAVAPEKREAEAAPGKSYSSGPQCHDKKDRQCSKTPKQTSRQECHEEYDVIVDTTYIEECQDIITTHCQETSQQVHRSSAVVGHDSKVVGRGYGGYGGYGIGKREADAEPKADAKADAKADAEPGQSYSTGPKCHDKKDRQCQKIPKQNSRKVPRKECKTIVDTTYIENCQDIITTHCQETHQKVSHSSAVVGHDSQVVSRGYGSYGGYGY
Ga0192940_1002923	Ga0192940_10029231	F086382	MLCLNERNDSKLRSNLLVHDMESQSVTSTLDLGDQVTKLLDSFHLLTKELSLDEITEMSISFAVTGLVEIKKTLVDCFLQLKSSLHGLKWSAPLHAAWLGNILEDDTSSSLGLVLHQLHPVITLLIRALLEEGGKSRKSLVITVEVRGHGQVDIAGVELHVDLLVDESLALLMVVLSDLGSHDAIEEKVVEKVVIADCSTRSG