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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018509 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0216902 | Ga0192995 |
| Sample Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001642 (ERX1782430-ERR1711958) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 3763974 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 12 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | oceanic mesopelagic zone biome → marine mesopelagic zone → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Pacific Ocean: TARA_100 | |||||||
| Coordinates | Lat. (o) | -12.9794 | Long. (o) | -96.0232 | Alt. (m) | N/A | Depth (m) | 177 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000287 | Metatranscriptome | 1370 | Y |
| F002590 | Metatranscriptome | 545 | N |
| F002881 | Metatranscriptome | 523 | Y |
| F006459 | Metatranscriptome | 372 | N |
| F014218 | Metagenome / Metatranscriptome | 264 | Y |
| F023858 | Metatranscriptome | 208 | Y |
| F041786 | Metagenome / Metatranscriptome | 159 | Y |
| F049661 | Metatranscriptome | 146 | Y |
| F049677 | Metatranscriptome | 146 | N |
| F074919 | Metatranscriptome | 119 | Y |
| F085748 | Metatranscriptome | 111 | N |
| F100239 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0192995_100100 | Not Available | 1162 | Open in IMG/M |
| Ga0192995_100187 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus | 1013 | Open in IMG/M |
| Ga0192995_100445 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis | 809 | Open in IMG/M |
| Ga0192995_100520 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus | 768 | Open in IMG/M |
| Ga0192995_100732 | Not Available | 674 | Open in IMG/M |
| Ga0192995_100742 | Not Available | 671 | Open in IMG/M |
| Ga0192995_100773 | Not Available | 661 | Open in IMG/M |
| Ga0192995_100880 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 630 | Open in IMG/M |
| Ga0192995_101189 | Not Available | 563 | Open in IMG/M |
| Ga0192995_101201 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota | 561 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0192995_100100 | Ga0192995_1001001 | F006459 | PGHSGCKWNTELKRGDVSIWNWVGDYSFVNNANKFEMKTMDKIVQTEMSPFYGLDHFYLGRYYKNGERHRTITYEKKNRNFLLGKLFVENTITLDGEKFSQEKLDTRSTPYTMVWFSQPVRGLFPITRDITGQDEMIVSAWHTPGKELKIETNLPEVQSMKVTSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKMKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH |
| Ga0192995_100187 | Ga0192995_1001873 | F000287 | SGINAEYMGESGGGSLTGPRLHRLQEFQEDFKMTAGGAWRRPRMKVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKTGNHKLDTKYRKHLAMVEACEDEYDYHHKLFGQGAVDRDFQFHNPQLVKDYVNQIRR |
| Ga0192995_100445 | Ga0192995_1004451 | F074919 | ILDNKLTGDRHSAFLVNSTYRGRVKIGVEYADFKFGDKKPNWFKAMKVKKDMVVDHYTKWFLHVFFDADPESPTYTQPVRFYGPYSGFAVYVKVEAKAPPAEVWDTACVDNGWGEKERKPLKHCMGKKLSEYKCMNVAKKNPAMCAPWEADAGAGEPVIIKGAFGSIVLPQAEQMTV |
| Ga0192995_100520 | Ga0192995_1005201 | F041786 | FRHSLMTFGVKFSASEVDDAFAEMKIDEGMIDAAHLKGLMVSK |
| Ga0192995_100732 | Ga0192995_1007321 | F023858 | MGVDNEAHHLWDYGTDGQKLWTCPKGNPSCVAYYLKLNGPNCCKCDQNIGKPKPWDIPESGFLTKVNFVAYEDTTELYDHQVKGAEHWYESTGIPQVVSITYDYFLHREDSGDVVSHRIDFDTTVQQSGSILYGNFSVQHDIDAHRQKFAVPEVCKGNILNCCPDMDKIDAKWFKHDYALRQVKKKAEAAIAV |
| Ga0192995_100742 | Ga0192995_1007421 | F049661 | HGAVTSVKYCSDNDVVKVTVKDGAVPLPITATLKKIACGSATEFASCTGSADPVITQPTCYRGSAGALGLTETVTVKVKTFSAPAGTLDFSGTGIEAFTCAGKTMTKSGQEITFSDSSDCLPSGIVVSDVKYCSDSDNIKLTIKDKAVPLPISAILSKIDCPSSIEVSV |
| Ga0192995_100773 | Ga0192995_1007731 | F049677 | MKLFSAAVLATAVTANLQGEYSKLARAWGNFNFNGENRMTATRRQQKEASEDEKIMWDELHYMKTNYYGPLFCGPWKWGNSYWENVWCGYMIHWKNFESAYKRLMTSQTIREKNARRDAASQGEINWWEGKLDEMIKKNQIVMELMPQNARDSLNGENALNNYAKFTEEPNPAGWDGYYTRPTLSGTCYVTRN |
| Ga0192995_100880 | Ga0192995_1008802 | F002590 | MGDFVCQSLTMKVVAALVTIALHQAAADWSGSGEFSCYGHVSTDVTSPEGGDHLGEGTLNCNIIEWGGGPLGPEAMFFKPNGGAEFEIWAWDYHDWDSEHWPMPYATCEGQIWYKRDDMGAGYCTPHQTEKGFTGCGYGHCVGDIVCIGC |
| Ga0192995_101171 | Ga0192995_1011711 | F002881 | GHLKSGTAMHDVVNVRALDEEELEEMIDPCKAASKASGVGASIAGLDGSAWGRVVADEGHCWRLHTGRIAKKDTEGTKWKWCATEEVSAENREGSAEKSDLLFVKGLGDRCRPGFSVVNSEFIAFHPHQCLPKYEIEYEIGSGW |
| Ga0192995_101185 | Ga0192995_1011851 | F100239 | VVDESLDDFGRTAVADLDNVIDVIAHGHKQVEEQFASMLHFLLHGSTPLK |
| Ga0192995_101189 | Ga0192995_1011891 | F085748 | FFFFFLSRNRILLQKNKGSTDSSDVHGVWSCSGESWSVLCLSGHDLSWEWESDLAVVELLNVWSSAVLGSDGFDTEDLDGSWSCSVSGTHISVSLGDGISGVSGSVFTVHVVRSRS |
| Ga0192995_101201 | Ga0192995_1012011 | F014218 | MDLNGLGIQLEAFFLVREELLNILALIALKLDHLSHLSINHDGAIASELLLNDLQNLLLVELLGETLDSGQSLTTISLLDTNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |