3300018503: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002303 (ERX1782097-ERR1712101)

Overview

Basic Information

• IMG/M Taxon OID: 3300018503
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217117 | Ga0193434
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002303 (ERX1782097-ERR1712101)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13188586
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean: TARA_128
• Coordinates
  • Lat. (^o): 0.0348
  • Long. (^o): -153.7857
  • Alt. (m): N/A
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002056	Metagenome / Metatranscriptome	598	Y
F004175	Metagenome / Metatranscriptome	449	Y
F032301	Metagenome / Metatranscriptome	180	N
F050128	Metatranscriptome	145	Y
F088751	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193434_100478	Not Available	1503
Ga0193434_100488	Not Available	1492
Ga0193434_100489	Not Available	1492
Ga0193434_100785	Not Available	1253
Ga0193434_103305	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	631
Ga0193434_103878	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	582
Ga0193434_104569	Not Available	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193434_100478	Ga0193434_1004782	F088751	MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFQSWPEHG
Ga0193434_100488	Ga0193434_1004881	F088751	MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRALFSLNNFFRSWPEHG
Ga0193434_100489	Ga0193434_1004892	F088751	MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRQLFSLNNFFRSWPEHG
Ga0193434_100785	Ga0193434_1007851	F032301	LSPQQADGFFYQGDMKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKNLAGRNFDFRAKSS
Ga0193434_103305	Ga0193434_1033051	F002056	GMNLDLLKMDKYTMDPAKDALFRGEFPVVMEMIGKIKDGVGAKNELDKVVDKNGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYLILFTAYMREASDLARNAVADDQKAALTLTSGKCAIPGDQLKLPRTFASFMEENSGMRGLIDTGKGNLQWERDIPPAALSNLESLAKTDFKGNLGKIIHDIYQTAHTMF
Ga0193434_103878	Ga0193434_1038781	F050128	SLAKTDFKGNLGKIIHDIYQTAHTMFSDMPQGDHKKRAKYRFASKTLMRILPTPFKGEVEELIEKKAITLDLYEILGKCTWKAVS
Ga0193434_104569	Ga0193434_1045691	F004175	CEDANSKLVDVVTVADVDAEDHVGNSLLQIWELTFGPKAKLLFRL