3300018501: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_S400007202 (ERX1782147-ERR1712052)

Overview

Basic Information

• IMG/M Taxon OID: 3300018501
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216992 | Ga0193169
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_S400007202 (ERX1782147-ERR1712052)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10800371
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea: TARA_026
• Coordinates
  • Lat. (^o): 38.4735
  • Long. (^o): 20.1718
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001293	Metagenome / Metatranscriptome	729	Y
F003503	Metatranscriptome	482	N
F004175	Metagenome / Metatranscriptome	449	Y
F022575	Metatranscriptome	213	Y
F034058	Metagenome / Metatranscriptome	175	Y
F059484	Metagenome / Metatranscriptome	134	N
F088751	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193169_100664	Not Available	972
Ga0193169_100667	Not Available	971
Ga0193169_100770	Not Available	915
Ga0193169_100907	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	849
Ga0193169_101516	Not Available	690
Ga0193169_101840	Not Available	629
Ga0193169_102133	Not Available	587
Ga0193169_102425	Not Available	559
Ga0193169_102508	Not Available	551
Ga0193169_102831	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193169_100664	Ga0193169_1006641	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSATKWGPLAKL
Ga0193169_100667	Ga0193169_1006672	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVSVGRSWMSAKKWGPLAKLLGVAKKSHSHNFRI
Ga0193169_100770	Ga0193169_1007701	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSATKWGPLAKLLGVKKKCISQNLRI
Ga0193169_100907	Ga0193169_1009073	F001293	MIRNSLICKLINVQASMKENNEKKIKNCDEISKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0193169_100999	Ga0193169_1009991	F022575	MQATATSNNNNKYKLINKINRYIKVILDPXEPNNVNKRCPATILAANRIDKVNGRIIFLTDSIITIIGIKNLGVPIGTKXQNKLLYXKIIDKIILPNHMGKAKFNVNDICLVLVKI
Ga0193169_101516	Ga0193169_1015161	F003503	FSPIEVDLACTAGSPLGAKLASAFETCLGGEEALKPEEVGVSERRRRRPNKGRKCPTVEQIKAKMGEGMEGDWCVLSQLGWIDENGNEKNETTAADLMSLNAEVLAELDESAMATCAQERVEMIGKMMEKKHKRCAKKFSEEDKAELTEMALKIQGYNCFKEMFHSACQKSVKNQIYAFFQAQAMAAASTDSPTTSAQGTTV
Ga0193169_101840	Ga0193169_1018401	F088751	XPQNLDIWGQKSIFXIVIAIFVDGANDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFRSWPEHGES
Ga0193169_102133	Ga0193169_1021331	F088751	XPQNLDIWGQKSIFXIVIAIFVDGANDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFRLWPEHGYGQKVGPLFWAQNFSFWPKNPIFAIRPQFSLMTHF
Ga0193169_102425	Ga0193169_1024251	F004175	VTLACKDANLKLVEVVTVADVDDENRVGNSLLQIWTFGPKATLLFRL
Ga0193169_102508	Ga0193169_1025081	F004175	LIDVTLACEDANSKLVEVVTVADVDSEDHVGNSLLQIWELTFDPKTKLFSDFELKGWSRF
Ga0193169_102831	Ga0193169_1028311	F034058	DEIPKEDCAKLLESLADPEDEDGFFPYTPFLDKLCGK