3300018500: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171)

Overview

Basic Information

• IMG/M Taxon OID: 3300018500
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216946 | Ga0193080
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6423211
• Sequencing Scaffolds: 8
• Novel Protein Genes: 23
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → deep chlorophyll maximum layer → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean: TARA_051
• Coordinates
  • Lat. (^o): -21.4689
  • Long. (^o): 54.3066
  • Alt. (m): N/A
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000108	Metatranscriptome	2213	Y
F002456	Metagenome / Metatranscriptome	557	Y
F008015	Metagenome / Metatranscriptome	340	Y
F009522	Metagenome / Metatranscriptome	316	Y
F021993	Metagenome / Metatranscriptome	216	N
F023609	Metatranscriptome	209	Y
F026786	Metatranscriptome	196	N
F031887	Metatranscriptome	181	Y
F035637	Metatranscriptome	171	N
F039152	Metatranscriptome	164	N
F089917	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193080_100529	Not Available	662
Ga0193080_100570	Not Available	651
Ga0193080_100683	Not Available	623
Ga0193080_101204	Not Available	547
Ga0193080_101209	Not Available	546
Ga0193080_101225	Not Available	545
Ga0193080_101305	Not Available	536
Ga0193080_101399	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193080_100529	Ga0193080_1005291	F035637	MGDPPFADWGRMATTLKVLVLALAFAAIATAAGVTVGIDNADLKEAMAEAEDTDSALEWTRKHLRNWGGDYKKILKHMPPLALKDAGINLAGARDLMGHTVSDSRMASNKELQILAKAENRLAAAKQDVHEAQTASSAVRRAQLEDLAEELTHEAVRRLEDTKEVE
Ga0193080_100570	Ga0193080_1005701	F002456	HFPHTQGSKSAIYQFQIDNNNAKAKQTSAVQFTAEISPDMDIENAYFYNERSQSNPGAKAQKGKCKIGQRSPSSQKDIQKRFPGARITFPKLIRCNMHHINDFATVYVHAKVGPKVKEIPAEDMIKASYSQNNELKESVELPLIDPSHATEMFEDA
Ga0193080_100602	Ga0193080_1006021	F000075	MGIIKKHKLTLQMKFAVALVATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0193080_100683	Ga0193080_1006831	F089917	AEFLQDMDTEPAAPEQGKPFAQSYSFSSFTSNTNGEVVTHRSENFQSSAGEKLSRSRRAIGQGESAKAIEETMKGEEQTRTLHNMEEQDLPAFNQQHAARLHWQPFHALEPRAEQPKHALHAALEQDIDRVAGSQ
Ga0193080_100802	Ga0193080_1008021	F031887	KTEAEKDAARQKMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDQYKTFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_100840	Ga0193080_1008401	F031887	EKDAARQQMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDEYKKFIKAAMASPTCPEHVELYWYILEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPAPSEGQYETLFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_100970	Ga0193080_1009701	F000048	MGTHAEADAEVAGLKTRFDAVKAVSDTWVKKCDVLVKEWILLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193080_100980	Ga0193080_1009801	F000075	MGIIKKHKLTLQMKFAVALVATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKKXAPDLNXTYLLI
Ga0193080_101169	Ga0193080_1011691	F031887	EKDAARQQMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDEYKKFIKAAMASPTCPEHVELYWYILEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLVSKEVYKKF
Ga0193080_101204	Ga0193080_1012041	F021993	YDPTTQNTNPQGQGISNGNGEEITHNAQQLKLGVNVWKGRFDKVWTNTRVNYANGIDMTVDSVYVTGPYSGKAIVRFNRTTGEYMHHFEDEYLNYPVDIKEFRDYIYVCSEDQVRKYNRMNGEFIKTHSQTDGLLGSFLLFHISWAQNLGE
Ga0193080_101209	Ga0193080_1012091	F039152	TWGILFFSSRKKMIAEATGTRRSNWKLYVVAITCVCFVAGMLVNSVSESAPADNKLDSVVTQALKMFHGSKANMPNDDDYLAGEADFQKRFKTLKGKADLYLQNETLTAWKGMNAKNVLVAGAIEKAFPQKDIKVAIAKALAGSGSGSAS
Ga0193080_101225	Ga0193080_1012251	F023609	TINPVHSINDLLSGTRFQEDKVAQGHLKSLGNAFHDISKTEEGKVLLDAMEGLASRIQTEGSFKDGVKVCFRLAKKITKNPWVQFGMFIGLFGLLVALVGQFGTISVLGAGFTQFMRSIGMFIVSSALMPLTHGVKQSVDKFMKGGEDFVEKKN
Ga0193080_101269	Ga0193080_1012691	F031887	WLKFCQEHIAAKTATMDPHPIIDHGSVEEYKEFIKVAICPTPCPQQVELYWYMLEIFTDHDSDMDGIIKMVEFPAMMNELLNVPKKHNLPVPSEGEYETLFKKYDPRNDGRLTVDEWMSLATQEVYKKF
Ga0193080_101272	Ga0193080_1012721	F009522	WGIQTRSFSLICSPEMAKAMRAAMRAAMRAMRAKKSIIANGKLAKLVVFRGTKTKTVGGLKKTDLVKSKTGKIVSRKQSAAGKKAYARIRGWTAAVIKARKFLNVKGFVAVKRGTPLYNKAKEFYKTK
Ga0193080_101305	Ga0193080_1013051	F026786	GGGIYDWSGTQASHVYAESGVAMGKPEIDALVKGWWDGASDGWSSDKEYNELAKDYKPTLGGDEYVCLGRQAFGDGDCMHIFRCKSKKKGDKTMACFAHSDYTLALALTNEDKGKAPGPAQVAVQSLMEAYKEAGY
Ga0193080_101313	Ga0193080_1013131	F009522	TSLRIMAKAMRAAAMKAMKRVSKFAKGKLAKLVVFRGNKEATLSGLTKSSLMRNKNGKIVSKKQSANGKKAYARIKGWTMAVAKARKALGVKGFVAVKKGTPLYKKAKEFYGQ
Ga0193080_101376	Ga0193080_1013761	F031887	ITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGILKMAEFPAMMNEFLTVPKKHNLTVPAEGQYETLFKKYDPRNDGRLTVDEWMKLASEEVYKKY
Ga0193080_101399	Ga0193080_1013991	F008015	MTTVKDSDGKAIEAILTEVFTLMDANGDNCIDEDEGVQIGMAMGESKEQASKSWAAMCKDMDDDGNTTIELPEWLDFYKKSLKDAVLDDVLQMLNQMKDTIKAHKDKEAAEKGA
Ga0193080_101496	Ga0193080_1014961	F000075	MKFAVALVATVAANQYDYMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKKXDAKQXSLSSLIXFYNXQLMSAFSLWASSLRSM
Ga0193080_101566	Ga0193080_1015661	F031887	KFCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_101677	Ga0193080_1016771	F031887	FCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDNDKDGIIKMAEFPAMMNEFLTVPKKHNLTVPAEGQYETLFKKYDPRNDGRLTVDEWMKLASEEVYKKY
Ga0193080_101678	Ga0193080_1016781	F009522	TWGSRSDLVRLSEVFQTSLRAMAKAMKAMKAMKRVSKFAKGRFAKSVVFRGTKASTVGGLTKANLMRNKNGKIVSKKASANGKKAYARIKGWTAAVTKARKALNVKGFVAVKKGTALYKKAKEFYGH
Ga0193080_101744	Ga0193080_1017441	F000108	HGKSTKNDGYGPKGVVCSRKPTQNCYNIPRKIQVEVCKTDVHRYCEKFSNIFPFPVEEQNCHFEPKKICELEMKTRPKKAKKYSYTKDCKEQPREICDQCEKKSLRPVCEMQQRLECVYTPKEECRDEDKQYCHKVEKVELVEECDMKFDTSYL