3300018496: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002193 (ERX1782219-ERR1712143)

Overview

Basic Information

• IMG/M Taxon OID: 3300018496
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217138 | Ga0193477
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002193 (ERX1782219-ERR1712143)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5412536
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean: TARA_135
• Coordinates
  • Lat. (^o): 33.02
  • Long. (^o): -121.7406
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047103	Metagenome / Metatranscriptome	150	Y
F059045	Metagenome / Metatranscriptome	134	Y
F075646	Metagenome / Metatranscriptome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193477_100297	Not Available	1002
Ga0193477_101286	Not Available	546
Ga0193477_101287	Not Available	546
Ga0193477_101288	Not Available	546
Ga0193477_101289	Not Available	546
Ga0193477_101290	Not Available	546
Ga0193477_101291	Not Available	546
Ga0193477_101292	Not Available	546
Ga0193477_101343	Not Available	539
Ga0193477_101552	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193477_100297	Ga0193477_1002972	F075646	MTFSPLIIWAKAPFFFEQLFPVVARTWLGLKSECLFFGPKFWFLAQKSDFCHTTPIFVDDPFLALGMTVNFPPWKRFFDFPFRSYSCFRKKIRLTAQKVFPPPTCGSSVCQ
Ga0193477_101286	Ga0193477_1012861	F047103	MTKNADFGPNLAVFGPKILIFMGVSKSFGTNITENHLDNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101287	Ga0193477_1012872	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKSLIFMGLSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101288	Ga0193477_1012882	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKILIFMGVSKSFGTNITENHFGNLSALFFGHALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101289	Ga0193477_1012892	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAIFGPKSLIFMGLSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101290	Ga0193477_1012902	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKSLIFMGVSKSFGTNITENHFGNLSALFFGHALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101291	Ga0193477_1012911	F047103	MTKNADFGPILAVFGPNILIFRGVSKSFGTNITENYLDNLSALFFGQTLDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101292	Ga0193477_1012922	F047103	LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKSLIFMGVSKSFGTNITGNHIHNLSALFFGQALDKMGQKCRYLAQNASFWPNLAVFGPKIQFFGGRE
Ga0193477_101343	Ga0193477_1013432	F047103	MTKNEDFGPNLAIFGPKSLIFMGLSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193477_101552	Ga0193477_1015521	F059045	LDNILCNLGDEIPKEDVQKMFAEICDPEDEDGLFPYMSFLDRLTGKA