Sample 3300018411

Overview

Basic Information
IMG/M Taxon OID	3300018411 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114818 \| Gp0116263 \| Ga0194137
Sample Name	Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3_14
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	753948376
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium	1
All Organisms → Viruses → Predicted Viral	3
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium → Halanaerobium saccharolyticum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. EG6	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hydraulic fracturing → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	41.2451	Long. (^o)	-76.9856	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000695	Metagenome	931	Y
F009516	Metagenome	316	Y
F022820	Metagenome / Metatranscriptome	212	Y
F030941	Metagenome	184	Y
F078253	Metagenome	116	Y
F084270	Metagenome / Metatranscriptome	112	N
F087432	Metagenome	110	Y
F090615	Metagenome / Metatranscriptome	108	N
F104682	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F000695

Metagenome

931

F009516

Metagenome

316

F022820

Metagenome / Metatranscriptome

212

F030941

Metagenome

184

F078253

Metagenome

116

F084270

Metagenome / Metatranscriptome

112

F087432

Metagenome

110

F090615

Metagenome / Metatranscriptome

108

F104682

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0194137_10048639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium	2062	Open in IMG/M
Ga0194137_10075920	All Organisms → Viruses → Predicted Viral	1575	Open in IMG/M
Ga0194137_10076605	Not Available	1566	Open in IMG/M
Ga0194137_10100949	Not Available	1316	Open in IMG/M
Ga0194137_10130206	All Organisms → Viruses → Predicted Viral	1116	Open in IMG/M
Ga0194137_10139332	All Organisms → Viruses → Predicted Viral	1067	Open in IMG/M
Ga0194137_10170118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium → Halanaerobium saccharolyticum	934	Open in IMG/M
Ga0194137_10175841	Not Available	913	Open in IMG/M
Ga0194137_10299152	Not Available	637	Open in IMG/M
Ga0194137_10313286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	618	Open in IMG/M
Ga0194137_10323192	Not Available	605	Open in IMG/M
Ga0194137_10353492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. EG6	568	Open in IMG/M
Ga0194137_10358417	Not Available	563	Open in IMG/M
Ga0194137_10386099	Not Available	533	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0194137_10048639

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium

2062

Open in IMG/M

Ga0194137_10075920

All Organisms → Viruses → Predicted Viral

1575

Open in IMG/M

Ga0194137_10076605

Not Available

1566

Open in IMG/M

Ga0194137_10100949

Not Available

1316

Open in IMG/M

Ga0194137_10130206

All Organisms → Viruses → Predicted Viral

1116

Open in IMG/M

Ga0194137_10139332

All Organisms → Viruses → Predicted Viral

1067

Open in IMG/M

Ga0194137_10170118

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium → Halanaerobium saccharolyticum

934

Open in IMG/M

Ga0194137_10175841

Not Available

913

Open in IMG/M

Ga0194137_10299152

Not Available

637

Open in IMG/M

Ga0194137_10313286

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

618

Open in IMG/M

Ga0194137_10323192

Not Available

605

Open in IMG/M

Ga0194137_10353492

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → unclassified Sphingopyxis → Sphingopyxis sp. EG6

568

Open in IMG/M

Ga0194137_10358417

Not Available

563

Open in IMG/M

Ga0194137_10386099

Not Available

533

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0194137_10048639	Ga0194137_100486394	F087432	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEEIIFSAEQDARLQEISELSIPQGFQAQVREYVENGNFPDGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0194137_10075920	Ga0194137_100759204	F084270	MPRQTGETNTQFPDGFRLEISTDGTTGSVWEEVGVLAGGATATLNWTDFYLDAGNYEGLVDKARDPEFALAPSAVWNWDATVIANLFPGMFSTSSATLPTTGTDVEYAGTSNQVTLTRSKIRLTHYTVDASGGAETNADIDWQFTLHNAKIDAGGSFNFKGVNEDGLDEITVSFTGKPDPASSYALFT
Ga0194137_10076605	Ga0194137_100766051	F090615	MRALQLAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEEAVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS
Ga0194137_10100949	Ga0194137_101009491	F087432	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEQITFSAEQDARLQEISELDIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0194137_10130206	Ga0194137_101302062	F104682	YSIGETMREIGIDRPRFDIKVSTQTFTLYFIPNIARKKYIDFWARVEKMLEAMKIQNKKKRKEMVDAISSDDEDELLREIIQIIMEANGYVYDAEWWEGHTDAEMQLEFVRAVIENADDSKKKVMAMLKA
Ga0194137_10139332	Ga0194137_101393323	F087432	LIIYENGEYTPCTYRVTLQNRGVEETHYANFRTYWEDVVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI
Ga0194137_10170118	Ga0194137_101701183	F087432	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLSFEQITFSAEQDARLQEISELNIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERVQHQNDIDGAYQMILESEGLI
Ga0194137_10175841	Ga0194137_101758413	F078253	VFRHVKIKVMEIRKIYRIENPIDMDGMWYTKNGVERRKIHLLCPDGISKDLPMPFNIELHRKDGLIWNSAGKSIENMREWFTDKDAANLYNNGFRLFEFHTTIYNELEHEILFCRDGSVMQRDIPLETIWKL
Ga0194137_10299152	Ga0194137_102991521	F022820	RISKILEKRVLKDEDPRLIAEIEKHLAGLEVVWHKWVKAHPNWKEQED
Ga0194137_10313286	Ga0194137_103132862	F009516	MARPMIYPMGTLEVGEVATMPATKRGDAKRTSRNASQYGIRNGKAFKCRTVEG
Ga0194137_10323192	Ga0194137_103231921	F104682	RTRPRRRLSADEAVYSIGENMREIGIDRPRFDIKVSTQTFTLYFIPNIARKKYIDFWARVEEMMKAMKIQNKKKRKEMVDAISSDDEDELLREIIQIIMEANGYVYDAEWWEGHTDAEMQLDFVRAVIENADDSKKKVMAMLKA
Ga0194137_10353492	Ga0194137_103534921	F000695	MIYAQHFEAEEFRDWSDDMSARLVTMMDVLRFQVGSPIVISPHPDSLGRELGPNDQS
Ga0194137_10358417	Ga0194137_103584171	F090615	RAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTNPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS
Ga0194137_10386099	Ga0194137_103860991	F030941	FGALVIYHVFVRRKHEPADKSNRINHFRLVWFALTREELFVNLFPWMKRDEYDNMHS

Scaffold ID

Protein ID

Family

Sequence

Ga0194137_10048639

Ga0194137_100486394

F087432

MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEEIIFSAEQDARLQEISELSIPQGFQAQVREYVENGNFPDGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI

Ga0194137_10075920

Ga0194137_100759204

F084270

MPRQTGETNTQFPDGFRLEISTDGTTGSVWEEVGVLAGGATATLNWTDFYLDAGNYEGLVDKARDPEFALAPSAVWNWDATVIANLFPGMFSTSSATLPTTGTDVEYAGTSNQVTLTRSKIRLTHYTVDASGGAETNADIDWQFTLHNAKIDAGGSFNFKGVNEDGLDEITVSFTGKPDPASSYALFT

Ga0194137_10076605

Ga0194137_100766051

F090615

MRALQLAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEEAVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS

Ga0194137_10100949

Ga0194137_101009491

F087432

MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEQITFSAEQDARLQEISELDIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI

Ga0194137_10130206

Ga0194137_101302062

F104682

YSIGETMREIGIDRPRFDIKVSTQTFTLYFIPNIARKKYIDFWARVEKMLEAMKIQNKKKRKEMVDAISSDDEDELLREIIQIIMEANGYVYDAEWWEGHTDAEMQLEFVRAVIENADDSKKKVMAMLKA

Ga0194137_10139332

Ga0194137_101393323

F087432

LIIYENGEYTPCTYRVTLQNRGVEETHYANFRTYWEDVVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI

Ga0194137_10170118

Ga0194137_101701183

F087432

MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLSFEQITFSAEQDARLQEISELNIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERVQHQNDIDGAYQMILESEGLI

Ga0194137_10175841

Ga0194137_101758413

F078253

VFRHVKIKVMEIRKIYRIENPIDMDGMWYTKNGVERRKIHLLCPDGISKDLPMPFNIELHRKDGLIWNSAGKSIENMREWFTDKDAANLYNNGFRLFEFHTTIYNELEHEILFCRDGSVMQRDIPLETIWKL

Ga0194137_10299152

Ga0194137_102991521

F022820

RISKILEKRVLKDEDPRLIAEIEKHLAGLEVVWHKWVKAHPNWKEQED

Ga0194137_10313286

Ga0194137_103132862

F009516

MARPMIYPMGTLEVGEVATMPATKRGDAKRTSRNASQYGIRNGKAFKCRTVEG

Ga0194137_10323192

Ga0194137_103231921

F104682

RTRPRRRLSADEAVYSIGENMREIGIDRPRFDIKVSTQTFTLYFIPNIARKKYIDFWARVEEMMKAMKIQNKKKRKEMVDAISSDDEDELLREIIQIIMEANGYVYDAEWWEGHTDAEMQLDFVRAVIENADDSKKKVMAMLKA

Ga0194137_10353492

Ga0194137_103534921

F000695

MIYAQHFEAEEFRDWSDDMSARLVTMMDVLRFQVGSPIVISPHPDSLGRELGPNDQS

Ga0194137_10358417

Ga0194137_103584171

F090615

RAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTNPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS

Ga0194137_10386099

Ga0194137_103860991

F030941

FGALVIYHVFVRRKHEPADKSNRINHFRLVWFALTREELFVNLFPWMKRDEYDNMHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018411: Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3_14

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences