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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018409 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0213396 | Ga0187912 |
| Sample Name | Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 381396786 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 33 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| Not Available | 17 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium grantii → Clostridium grantii DSM 8605 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 3 |
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon GW2011_AR1 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4204 | Long. (o) | -119.6671 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011633 | Metagenome | 288 | Y |
| F013656 | Metagenome | 269 | Y |
| F039198 | Metagenome | 164 | Y |
| F041521 | Metagenome | 159 | Y |
| F044232 | Metagenome | 154 | Y |
| F052303 | Metagenome | 142 | Y |
| F058575 | Metagenome / Metatranscriptome | 134 | Y |
| F059514 | Metagenome | 133 | N |
| F059515 | Metagenome | 133 | Y |
| F059516 | Metagenome | 133 | Y |
| F061388 | Metagenome | 132 | N |
| F061415 | Metagenome | 131 | Y |
| F063222 | Metagenome | 129 | N |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| F076682 | Metagenome | 117 | Y |
| F080708 | Metagenome | 114 | Y |
| F086383 | Metagenome / Metatranscriptome | 110 | N |
| F094637 | Metagenome | 105 | N |
| F100397 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0187912_1009023 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1528 | Open in IMG/M |
| Ga0187912_1013623 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1372 | Open in IMG/M |
| Ga0187912_1026084 | Not Available | 1147 | Open in IMG/M |
| Ga0187912_1028532 | Not Available | 1118 | Open in IMG/M |
| Ga0187912_1049644 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium grantii → Clostridium grantii DSM 8605 | 938 | Open in IMG/M |
| Ga0187912_1052909 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 919 | Open in IMG/M |
| Ga0187912_1054232 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 911 | Open in IMG/M |
| Ga0187912_1055205 | Not Available | 905 | Open in IMG/M |
| Ga0187912_1068055 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 843 | Open in IMG/M |
| Ga0187912_1072477 | All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon GW2011_AR1 | 825 | Open in IMG/M |
| Ga0187912_1072730 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 824 | Open in IMG/M |
| Ga0187912_1078552 | Not Available | 802 | Open in IMG/M |
| Ga0187912_1080737 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 794 | Open in IMG/M |
| Ga0187912_1099389 | Not Available | 739 | Open in IMG/M |
| Ga0187912_1107755 | Not Available | 719 | Open in IMG/M |
| Ga0187912_1117172 | Not Available | 698 | Open in IMG/M |
| Ga0187912_1122931 | Not Available | 687 | Open in IMG/M |
| Ga0187912_1123078 | Not Available | 686 | Open in IMG/M |
| Ga0187912_1125530 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 682 | Open in IMG/M |
| Ga0187912_1134632 | Not Available | 666 | Open in IMG/M |
| Ga0187912_1140416 | Not Available | 656 | Open in IMG/M |
| Ga0187912_1156629 | Not Available | 632 | Open in IMG/M |
| Ga0187912_1157438 | Not Available | 630 | Open in IMG/M |
| Ga0187912_1219392 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 559 | Open in IMG/M |
| Ga0187912_1222092 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 556 | Open in IMG/M |
| Ga0187912_1230792 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 548 | Open in IMG/M |
| Ga0187912_1253487 | Not Available | 529 | Open in IMG/M |
| Ga0187912_1254292 | Not Available | 528 | Open in IMG/M |
| Ga0187912_1254789 | Not Available | 528 | Open in IMG/M |
| Ga0187912_1259081 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 524 | Open in IMG/M |
| Ga0187912_1273089 | Not Available | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0187912_1009023 | Ga0187912_10090232 | F061388 | MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELVGHLARMRRQNPNLNRQQAARALVSEANSKYSYQDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR |
| Ga0187912_1013623 | Ga0187912_10136232 | F059516 | MRVDLLMEALPVIGTGYLGIFIVTIVIIAVVSLLNKIGRK |
| Ga0187912_1026084 | Ga0187912_10260842 | F058575 | MARYYKFFMSGMNDTAIELMEQADQLRRNNRFGDAINLYRAAAAAPDATEELRRRSLASVELMQEINGFVNTDLMNP |
| Ga0187912_1028532 | Ga0187912_10285321 | F076682 | MKRFISVFLLFLFLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYTADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHHAEWDTEYYTGGYGDGYPYVALRSEMMEDFEFFWLTYHEGQGSETFMPYQPAIITEKYYYSDGYEEEIYSFDVENHSLYIRCRYYMEWEP |
| Ga0187912_1049644 | Ga0187912_10496442 | F011633 | MVKEEVWSIVPERAEAFFQSQPDVVREGKGRYRFGSCAITLTEMKPKGMGIWAAKRIRVRMEGEEAHVADIYHRFFLQFLSTGG |
| Ga0187912_1052909 | Ga0187912_10529092 | F058575 | MTAKELLERAEELRRSCDFGDAINVYRAAASAPDATEDIRRKALASVELIQEINGFVNVDLMNP |
| Ga0187912_1054232 | Ga0187912_10542323 | F041521 | AAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTVLENCLFAGKFERGANLTDEARLGAFGTLRSVKAIKNCYYLAHDGLAAVHSDSNLKPGSDNVEITPATEDDLRNNTVATQLGKLWEQGENYPVIRR |
| Ga0187912_1055205 | Ga0187912_10552051 | F100397 | MMKKLIAIIALSLSLILCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGEDVATIVEMFSSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDLNYLAQLVDVTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHDGQSVRALK |
| Ga0187912_1068055 | Ga0187912_10680551 | F059515 | TDTYGYEFCCKIVDASYTIIKAEELSADMALWQKIAESDVVNDIYKMYDYVNFLCSWPTYYVNNFTDENGNEVKGYYLYAADAENFVYQDGAQYNYGYQEGYFDSIIAKIESVDPSAFADLVANIRKAEALAQEALAELENGNYTSEYQYVEMFGQEDYVYTLNKGDELAARMNEIYTEFANWLGSWEM |
| Ga0187912_1072477 | Ga0187912_10724772 | F059514 | MHLVLTPVVFALRLNTAIFACFAGKNRKFRAPKKPTVGFFAQGLRK |
| Ga0187912_1072730 | Ga0187912_10727301 | F041521 | IRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR |
| Ga0187912_1078552 | Ga0187912_10785522 | F076682 | MKRLLGALLLLLLLLTFIPATAVSAEENDISKFELPAPKAPNYFVYTDGNASEGHHDDLRMIMVADPEVALLAAEYSKDSEAFYEKYGLWSFEICIQYDVSLDGEDNWQHNEEWDTNWYTDGIGNGYPYESIRSELMDDFEFFWLTYYEGEDGSVFEPYKPAITTYVYHHGDWDENIYSFDVENHSLYIRCRYYMEWEPLVKNDDGEGPGEKQSKFSDWSE |
| Ga0187912_1080737 | Ga0187912_10807372 | F058575 | MKADELYENAEQLRRECRFGEAINAFRDAMAAPDATQEIISRSQASVELIQEINGFVNTDLMNP |
| Ga0187912_1099389 | Ga0187912_10993892 | F100397 | MKRILILALSLSLLLCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGDEVATIVEMFSSLKLKELDYTEPSIKGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDA |
| Ga0187912_1103062 | Ga0187912_11030621 | F063222 | KKDAELFGALLYGNARNTLLEMINDAYNFKQYAVKAHGLLVSDGLDAADAKRAIEIFFKAFGFPGYREMDPSKVSTVSDTISENFTAEYEGEVLGGKEYGVGTRTCYSNGKWCSYDECVWIDGVMIGYDFAKEIEFGAFETQKIGFVVEDNFVGNIKCFYGEDEEIDAVSKFTV |
| Ga0187912_1107612 | Ga0187912_11076121 | F058575 | MGAQELFEAGVQHRKNRRFGEAINAFRAAAASPDATDDIISRSLASVELIQEINGFVNVDLMNP |
| Ga0187912_1107755 | Ga0187912_11077552 | F072921 | MKNRLSLHTDRKSASEGEYIEIRWSCDACPDSLHLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVITLKAVISGKKVTESVEIRIRNSKGTTARTASGISKTKIWKEKMLAKWYVFRAQMKYWWLSQKKWQKALWIALLIIWLGMLIASFMNSPEPKVSSGQVQTAYLRRFETSGLCLKMSLWQN |
| Ga0187912_1117172 | Ga0187912_11171722 | F013656 | MEEKLYKELNEQETETTINVLYKENILSIYTTKIDLQRQLNKILGEPTSESKKGKYIIGSRWDVSLEEKSKITQIMLKANIFEL |
| Ga0187912_1122931 | Ga0187912_11229312 | F058575 | LRFHYICVMDTNTKNIRLTSEELMNQAEELRRNNRFGDAINVFRAAAAAPDATEEIKRKSLASVELMQEINGFVNADLMNP |
| Ga0187912_1123078 | Ga0187912_11230781 | F076682 | ALIIGGLCIIMKKYLTIILVFVFALAFGSVTAYAAGEEDLSQFTFPKPKAPNYFVYTDGDASEGQHDDMRMIMVTDPEVALLAAEYDRDSDAFYEKYDIYSFAISMQYDVSLDDEEHWQHNEEWDTNWYTNGHTHGYPYMTIGSEMMEDFEFFWLTYYEGEGSDTFAPYQSAILTDVKKWTDYEEEIYSFDTENHNLYIRCRYYMEWEPYDAEKNEIGEKQSLFSEWS |
| Ga0187912_1125530 | Ga0187912_11255302 | F011633 | MIKEEIWSISIQRARGFFREQADVTEADANTFSFRSCRISLTELKPKGMGVWAARRIQVRMEGEDADVEEIYHRYFIQFLSTGG |
| Ga0187912_1134632 | Ga0187912_11346321 | F094637 | MKMSELESRLREHSNITKNTMQAPFDLNEEIKNMEVHTMSKPKITMKRTLALVAVLALCIITVTMTPLANSIKGFFSDIVRFDGAITGTKYENATNDIKVDVLESTSENGSVIIPLDLTFENPTEAPFPYIQEVAVSEYKILDSNNKEIIKTKVSEEGGDKGTVSNGKVLVNLSLNDAKLKSGEQYTI |
| Ga0187912_1140416 | Ga0187912_11404161 | F044232 | MKKLLSMILSILMIIPLCISGVSAEENDISKFELTAPKAPNYFVYTDGDASEGHHDDLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLDGEDRWQHNEEWDTEYYNDGHVNGYPVQSLRSEL |
| Ga0187912_1156629 | Ga0187912_11566291 | F086383 | IVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSR |
| Ga0187912_1157438 | Ga0187912_11574381 | F052303 | MDVVWIILAVLSFIGGQVYLFCLLGKLDAFLERRPGDEPTFPYDDSCRDPEDV |
| Ga0187912_1219392 | Ga0187912_12193921 | F080708 | MILDGCHEGKHTPRLSEVKCPVCGEWVDVFVRMGGRPGQTGTLATSEKCTCGNVLPEGSYETDYGR |
| Ga0187912_1222092 | Ga0187912_12220921 | F061415 | MFTINKLFDSEVIDHAAEELKKYLRMMMPESGDITVSYNPKAVSGFRLGLMQDFGL |
| Ga0187912_1230792 | Ga0187912_12307921 | F039198 | MQITSCEITNTKYIQIYLTGEELEKQETKELIKKYKKEKCSVAIFVTGKENYPEILEKIVTKQVELNKNVC |
| Ga0187912_1253487 | Ga0187912_12534871 | F072921 | QLYKPMKKQMTLSTDRKSASEGEYLDIRWACDACPDSLLLTIDSGYKCDTIAVADSGSTRLAMGRLKGKTTISLIGVISGKKVTESVEIRIRNRKESRKTKAPLSARMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIAILAI |
| Ga0187912_1254292 | Ga0187912_12542922 | F059514 | MHLVLTPVVFALRLNTAIFACFAGKNRKFRASKKPTVGFFAQGLRK |
| Ga0187912_1254789 | Ga0187912_12547892 | F013656 | MEKTYKEINKGETETTINVMYSEKILSVYTNNAELQRKLFKVLGEPTKEHIKGKSIIGSRWDVPLSEKSKISQMILKANIFEL |
| Ga0187912_1259081 | Ga0187912_12590811 | F061415 | MYTIYKLRSDRVVDFAAEELKKYLQMMMPANADIPIAYDPAAKEGFRLGL |
| Ga0187912_1273089 | Ga0187912_12730891 | F072921 | EIRWACDACPDSLFLSIDSGCNQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALLLGLLFSSIGRMPEVKVSSDKIQTAYIFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |