3300017923: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_210

Overview

Basic Information

• IMG/M Taxon OID: 3300017923
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0208781 | Ga0182239
• Sample Name: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_210
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124760682
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Texas
• Coordinates
  • Lat. (^o): 30.238
  • Long. (^o): -102.628
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F054403	Metagenome	140	N
F086646	Metagenome / Metatranscriptome	110	Y
F087432	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182239_1024189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	1077
Ga0182239_1025373	Not Available	1036
Ga0182239_1028346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	946
Ga0182239_1029735	Not Available	911
Ga0182239_1030168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.	900
Ga0182239_1033894	All Organisms → cellular organisms → Bacteria	816
Ga0182239_1035757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	780

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182239_1024189	Ga0182239_10241892	F087432	LIIYENGEYTPCTYRVILQNRGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI
Ga0182239_1025373	Ga0182239_10253732	F087432	LIIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHDHLTNLVFEEVTFSAEQDARLQEISGLDIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0182239_1028346	Ga0182239_10283461	F000388	MKVIKVTKEYFETDNEKVYFFEPLEKEISVEDMQKIVDANEKLVKELEDGTNTVSR
Ga0182239_1029735	Ga0182239_10297352	F087432	LIIYENGEYTPCTYRVILQNRGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISGLDIPQGFQAEVREYVENGNFPEGLDNPLASLKYKKEMNDAYKMILESEGLI
Ga0182239_1030168	Ga0182239_10301681	F086646	TMDFIFRIQNHYFEKGTPWVELDKIKQRSWFLSVDIEDDEVLPCYDTVHELRISQGIAFKSVKILTGKTQETHPYWEALLDMSYSNSTELRDVIFKDLPGESGNYMLNIWFDYDGEDINFGDTFKKLCEYRHKWDDGWVCSRCGVRKADWVEADIKGGE
Ga0182239_1033894	Ga0182239_10338942	F000388	MKVIKVTKDYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKEMKDGKSSNRL
Ga0182239_1035757	Ga0182239_10357573	F054403	MEMDYEDRLFIREVGARAARVLKTRNIRLWNEFKQRCEENSEKPESVLGKYLYKFAKSLVEEDGEFAEDLLETTIKMSALAKRKELLESLDEIAEVKKKLESAESSTIDKLIERLIETEIAKTAISPIDMIKADMAKQEH