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Sample 3300017817
3300017817: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (version 2)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017817 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0000103 | Gp0054606 | Ga0182792 |
| Sample Name | Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (version 2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 354976755 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | Emeryville, CA |
| Coordinates | Lat. (o) | 37.840898 | Long. (o) | -122.289614 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F011188 | Metagenome / Metatranscriptome | 294 | Y |
| F017885 | Metagenome / Metatranscriptome | 238 | Y |
| F036899 | Metagenome / Metatranscriptome | 169 | Y |
| F089171 | Metagenome / Metatranscriptome | 109 | Y |
| F099155 | Metagenome | 103 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0182792_1000212 | Ga0182792_100021224 | F036899 | MPDDDAKLLEEIGRMLWGPNWKGPLAEAIQHQRKAVADWAGGRQPVPAGVWSELREMMRRRRHQLDELAPRVESAHDAALARTVEQTMHPRDGGRDPGR |
| Ga0182792_1000726 | Ga0182792_10007268 | F089171 | MISKHSPLGTQEHELLQRIARTGKCSSALLSSTQRLRFEMLGLIEDRADGVWLTERGRALAAATVEQQPTQKATERTPPRDRRGRRLGLRRRSPF |
| Ga0182792_1001483 | Ga0182792_100148315 | F099155 | MKSLERLVVTPEHFPLEITVSTGEKYLLPHPDHVQMHPNTRDLVIYPDEGPFSLVINPA |
| Ga0182792_1002333 | Ga0182792_100233313 | F017885 | MANPNADVAGFQCPKCGQELEQTIGQLKSSEHMICSGCGIGINIDTNRLANLADELQKATAKVPPEITVKFYR |
| Ga0182792_1065048 | Ga0182792_10650481 | F011188 | METYNVYMDELPTGNEIDGEETIEVEFRVVAASTDDSESESNAVIAGLDLVDLINMRDALQQEIDNYALSALEAQAGLISGENI |
