3300017817: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017817
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0000103 | Gp0054606 | Ga0182792
• Sample Name: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 354976755
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Emeryville, CA
• Coordinates
  • Lat. (^o): 37.840898
  • Long. (^o): -122.289614
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011188	Metagenome / Metatranscriptome	294	Y
F017885	Metagenome / Metatranscriptome	238	Y
F036899	Metagenome / Metatranscriptome	169	Y
F089171	Metagenome / Metatranscriptome	109	Y
F099155	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182792_1000212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	57004
Ga0182792_1000726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	29395
Ga0182792_1001483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	18949
Ga0182792_1002333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13533
Ga0182792_1065048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	891

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182792_1000212	Ga0182792_100021224	F036899	MPDDDAKLLEEIGRMLWGPNWKGPLAEAIQHQRKAVADWAGGRQPVPAGVWSELREMMRRRRHQLDELAPRVESAHDAALARTVEQTMHPRDGGRDPGR
Ga0182792_1000726	Ga0182792_10007268	F089171	MISKHSPLGTQEHELLQRIARTGKCSSALLSSTQRLRFEMLGLIEDRADGVWLTERGRALAAATVEQQPTQKATERTPPRDRRGRRLGLRRRSPF
Ga0182792_1001483	Ga0182792_100148315	F099155	MKSLERLVVTPEHFPLEITVSTGEKYLLPHPDHVQMHPNTRDLVIYPDEGPFSLVINPA
Ga0182792_1002333	Ga0182792_100233313	F017885	MANPNADVAGFQCPKCGQELEQTIGQLKSSEHMICSGCGIGINIDTNRLANLADELQKATAKVPPEITVKFYR
Ga0182792_1065048	Ga0182792_10650481	F011188	METYNVYMDELPTGNEIDGEETIEVEFRVVAASTDDSESESNAVIAGLDLVDLINMRDALQQEIDNYALSALEAQAGLISGENI