3300017557: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549026-SRR1294412)

Overview

Basic Information

• IMG/M Taxon OID: 3300017557
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212361 | Ga0187715
• Sample Name: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549026-SRR1294412)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32926771
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Lake Texoma, Oklahoma
• Coordinates
  • Lat. (^o): 33.98
  • Long. (^o): -96.67
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008291	Metagenome / Metatranscriptome	335	Y
F008555	Metatranscriptome	331	Y
F010978	Metagenome / Metatranscriptome	296	Y
F017834	Metatranscriptome	238	Y
F043734	Metagenome / Metatranscriptome	155	Y
F067275	Metatranscriptome	125	N
F071920	Metagenome / Metatranscriptome	121	Y
F094737	Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187715_104511	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1757
Ga0187715_112222	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	959
Ga0187715_112904	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	914
Ga0187715_113150	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	897
Ga0187715_114875	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	794
Ga0187715_115619	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	752
Ga0187715_116616	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	699
Ga0187715_120568	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187715_104511	Ga0187715_1045111	F008555	VRAGGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0187715_109730	Ga0187715_1097302	F010978	AMAGNPFERTSVQILLVAALVALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYANRTEVALSIICIILCIVPTYFVHNFEVPCSNWELGSKFSLSTTKSQLLDGVFRMEPNASRFDKFLPLGLSMYSLSMFNPGIAIKCNTSEIYHSGIKLDDAAGEKTHDYLLLSSPRKVKSSTTGIMLLARVPVSIELWPAGIEDYSFNLQTASNIIAPPTVVGELMPLDKGPAIEHLKKKHHLRPFLIDVYRVDYHFGGD
Ga0187715_112222	Ga0187715_1122221	F071920	AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPEXXXXSIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMLQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0187715_112904	Ga0187715_1129041	F008555	GKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0187715_113150	Ga0187715_1131501	F067275	ATDHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0187715_114875	Ga0187715_1148752	F008291	LGMDIADLRATRIASDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM
Ga0187715_115619	Ga0187715_1156191	F094737	RDSSVRYQMVLSDSQAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0187715_116616	Ga0187715_1166161	F017834	MGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
Ga0187715_120568	Ga0187715_1205681	F043734	PRLPRGVRRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE