3300017354: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 590 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1426)

Overview

Basic Information

• IMG/M Taxon OID: 3300017354
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211973 | Ga0186261
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 590 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1426)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53100319
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000342	Metatranscriptome	1262	Y
F027184	Metatranscriptome	195	N
F042164	Metagenome / Metatranscriptome	158	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186261_103717	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2207
Ga0186261_115807	Not Available	1057
Ga0186261_115904	Not Available	1050
Ga0186261_125708	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186261_103717	Ga0186261_1037172	F027184	FGSSIISGENFLPRCAMSMHDLLEGVRLMAQAIRALSEQNTEAGTRALADAEQRFQGAAGLEGVLSSLQNNASRVPELEASFRSVERRLQDGGEDGAIAGNFRQSGAKTDAQILKKVSTRLQDFEAQITAQLSNMQGDFDKKLSHLNRGASGMRPLDTTSASAGLDTIAEDLDALKYDVGELKDLLSNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKGEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESNAKITSDTDQAIRL
Ga0186261_115807	Ga0186261_1158071	F000342	MNLVGICMNIFFPWIVFCLLYAMLSFSFHYRHPTWAWIVVGCGFLVVALVLFIAFRARRRGNEPMWYNFAALALFLAVLLAAVFGDMNFWYNMQPFYDIENLNTYPNVDPSMDRGQQRMDAGRVYFTQDTRVDTTKAMGFKNLDIYCVAPIVKGEKAPVTFDFWAVGINCCSGQSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFKITAAHPLFFYWMQDPVAEMNAYRDEGFKYYLLGIFSHFAFNLFCVVCAVVGFSKVGA
Ga0186261_115904	Ga0186261_1159041	F000342	WHRALGAAASPPFTGSETSKNRSCAPARGPPLLDRAMLPGGELKGSTMFAPGKKRRINLVAIAMNVFVPWLVFCVMYAMVSFSFHYQHPTWTWVLVVVGYIGVAILAVVTWRTKLRDRDPTWYGYAVLALFFAVTFSFIFGDMNFWYNMQPFYDIENLNTYPNVDPSVDRGQQRMDAGRAYFTQGTKVDVTKSMGFKNLDIYCVAPIVKTGEKPDTYDFWAVGTNCCSGNSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFRITAAHPLFFYWMQDPVAEMNSYRDEGFKYYLLGIFTFFSLNLFGVLCAVIGFSKF
Ga0186261_125708	Ga0186261_1257081	F042164	GEDLTFVDGEAQAALEGIGPPGVPADKWVFQQLVAAALAAPEGCVWKSGGKFILSNEERNQAPSAIIALLERGNPGSAIGIAVRALVAYTEKEHDCRVTAIQINFHANQDSSHKQHRDIFGAGQKGGINCTCSFMKCIGTVCYSFGSSRQVMTETLTDKRSRYEACGEECQGMRVKKWFQSGMAMFFNDKWNNSHSHGIPKMEKPCGPRIS