3300017318: Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 528 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0987)

Overview

Basic Information

• IMG/M Taxon OID: 3300017318
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212196 | Ga0186484
• Sample Name: Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 528 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0987)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41499960
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	6
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean: Baffin Bay
• Coordinates
  • Lat. (^o): 78.5922
  • Long. (^o): -74.4922
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F020015	Metagenome / Metatranscriptome	226	N
F021541	Metagenome / Metatranscriptome	218	N
F032673	Metagenome / Metatranscriptome	179	Y
F096687	Metagenome / Metatranscriptome	104	N
F101267	Metagenome / Metatranscriptome	102	N
F101269	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186484_108795	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1227
Ga0186484_109544	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1173
Ga0186484_112468	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	992
Ga0186484_114196	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	898
Ga0186484_115046	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	859
Ga0186484_116236	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	806
Ga0186484_117701	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	747
Ga0186484_120139	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	662
Ga0186484_123419	Not Available	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186484_108795	Ga0186484_1087952	F010032	DRIGNQIMLRVLNTVTVCLALGLCALAGWQIQNPATFELVSKSPAAAIQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRVEQASIETYAVKTRSLPPGGKSMLDSLGATQAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186484_109544	Ga0186484_1095441	F020015	MGAEYLVAPDPHRSANRPSDSYYAKRAFLVAVVVAAVVCGVLLAAPRPVGEGGDAALAGSYYAVTKPPAFNFNRFIRHAWFYDGRSVAGDQEVFLEKMAKTHHYKLQIHKLRSFRDSEFRAALFSESIHCIVFPPLLKFPGISELAKKDFRGYISSGNNAVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMHRLEQPDGSVYGVKVNSIPMDGKCMFDTMGACVVFYVKYNLGTIVYIAFDYDTPYGADKWTQILHAGMMM
Ga0186484_112468	Ga0186484_1124681	F020015	KSVSTMASTGSPPLALYGAVVTKPDGAGRRLRIVAVACVVALAVVCGVLLAVHTTDQEAGSQSLAGAYYAVAKPPAFNFNRFIKHAWFYNGHAVNPESELLVEKLAKKHHYKLEIHHLRTLKDNEFRAALFSEEVHCMVFAPLEHFPGFSELARTDLRGYVSAGNNVVFVGSYEYLSVMNDVFGFGLMSAYADGPYYRNDRTVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGNCMFDTMRVCVAFYVKYNLGTIVYLAFDYDQPNVGHWDQILHAAMMM
Ga0186484_114196	Ga0186484_1141961	F010032	KSQEMLDTARGLNTAVLCAALLAVCVAGWHMNSAGQSELFQTSVEAVPQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPYQFLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186484_115046	Ga0186484_1150461	F032673	ADYGSLPAAVEGAPVHPRRRAALLFAGVAALAAVAVLGCVFLVNQDDGMTTLAALNQQEMNAILSKASSMSTQQLSAEVSRLEMSKSLKSVKAVRMQSLVSQNSAANPEGGIYEDVPATVVGPIPGPPDWNGASAVVARLPNIGFAPSMLTEKGVETRGSFTARKSRAGESFYLRIYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGYKKIYIGKSQMQTQHIPRGIVGEFDIMTCRDMGNGEVQYFRIRYA
Ga0186484_116236	Ga0186484_1162362	F101267	QAPSSRQVSRRDYRHIKMGCCSSRAPGSHEWQAQVPGSFKANPIPTVNKKQAIPADFFQKCYMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVAEGPDEEKALEWYEASLKASSRRN
Ga0186484_117701	Ga0186484_1177012	F021541	MLFACSSLTEPPFLLQMFSTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186484_120139	Ga0186484_1201391	F101269	FVNLFSLHPKMISMLDSVCIPAGHVGGGTLVAKCHSTAKGAPPTAKVNGWGPYFANDSHGYIAYGTGEYDGQGSGHSFGGDIWHPSHGYNNNCDGGRSHWSCDFRQA
Ga0186484_123419	Ga0186484_1234191	F096687	YTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNCPLSPPFTKNT