3300017313: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 15 C, 32 psu salinity and 235 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0146)

Overview

Basic Information

• IMG/M Taxon OID: 3300017313
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211796 | Ga0186084
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 15 C, 32 psu salinity and 235 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0146)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37986692
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013853	Metagenome / Metatranscriptome	267	N
F016763	Metatranscriptome	244	Y
F022203	Metatranscriptome	215	Y
F035176	Metatranscriptome	172	Y
F037016	Metatranscriptome	168	Y
F038555	Metagenome / Metatranscriptome	165	Y
F080844	Metagenome / Metatranscriptome	114	N
F098438	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186084_102855	All Organisms → Viruses → Predicted Viral	1912
Ga0186084_109933	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1085
Ga0186084_111580	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	992
Ga0186084_115213	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	824
Ga0186084_119565	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	672

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186084_102855	Ga0186084_1028551	F037016	GKTPHEMGSNLNAAMRRMFPNTKPCEEWTAEGLQAYQEQLHMHRHEDLDSIYQSSNDNRRMVHASLDDYRTHWTRVNELVRTHGHLAKMHRDGHCHEAVMWLVHHVPVEEQQTRFANQVAPLLPLSAHYGPCGSNATASELEVCNVYEGMRSCAECHSGSGIPMQDYNDPNGYIPEDPKLPGYARQRRCDQNYLPKCGPCEGIGGPYWGDDLKYFQPTNCEVVATPEQVAQADRVLPQFGEQLIVHQLGSDRLARTQNAANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
Ga0186084_109933	Ga0186084_1099331	F022203	SIPPITDVRNTTTPTHAPRVNMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALVPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLADGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDKLKKIRKEKGCSSAQANLKQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGASCSELERIIATDKKAVQFEKDKLEAMGSKVDPKDKKIVAEAEKVIEKQVAKLAGLQKTKGCL
Ga0186084_110510	Ga0186084_1105101	F016763	QVCMLLTGFRPSRRAAPSWICPPLADSPCGHSPPAHRSESHQQAMGGGEVNYVHEAEIWRQQLKNEVEVAATWGDNWGFLTGREPPPARGFSQKVAKYAYGQGKWSVKSVRVPDDTEEGVSAAESEQNARKMMSTLSYDTKPVAPVKPCDAKGVRAVSNDVDGVESREAALLMRSHRLQSLGDACLTDGLNPGEKYRAPVLDSHEYGWRVPMKGNGMPNLEMFGVAEHGKQGVVKKFN
Ga0186084_111580	Ga0186084_1115801	F013853	PPKALCHGPAPPTRVPAQVKISQPIADTGSKWDSYSKFRLGGMLSKVPRHIRAAGDPNRLAFTLGYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTKVFNEYLQDLSAFYTSATGQRVACCGDTAVKIVHRTGVELEVHLEVALDRKPTIGEFLDKVEWDDRAAAFACSSTDGYLYVHEILD
Ga0186084_115213	Ga0186084_1152131	F035176	TMGVLPAAADKPKILFYGAMMAIQNYGFYEAYYGLYPQIPSFVGSVDCGTLRFWVGFFALDCFIESFCCLWMAMGGYVSSNFWFAFGWILHLIVALPYCVSTVAIPISMYADEGKVCRKAMGPAEDVLSAVYWVHCSLFMCYVWMMLSITYYSFLKPTFITKTKIGDSA
Ga0186084_119265	Ga0186084_1192651	F080844	EEKAPQPGYVVGAVTTRLTVTVPHGIAGGELVRVAAPDGSYHSIMVPAGLMAGQQFSVELLAGSNAVDYAKLKMELEAERALRRETQQEALRCRTALEELQQKRMADHAFFRDMIKRQRRSIEHLTEV
Ga0186084_119565	Ga0186084_1195651	F098438	ARLGVKLQGPPSGWGWKDDQLFGIEPKRAPMAAVFVIDRTFEGFLQKVVDAVVNVYDKYLEPDDLVGYYGLGDKWIFEPQEKGKHAKKLREQIVGSVEKAGDPHVYSSIAKCVDVLSTQVDDKYSKWLVVLTDTADFECANEKGVFDKGSKERAEKAVDGVVKQMRALSGLNLVVIDASGIANFDAKHMLWPTWHKLSQKLTDDVGDANTGLNIEATNADEID
Ga0186084_120721	Ga0186084_1207211	F038555	RELLAGKLKLAKVYGQEEPPAAEDELEWEARYFVLFDSRRICHFDDLLDGQPLGDRGLIYLTNIKSVEKVVGVPTFVMKADSKVYMFKLEPHDEATMRTWIAAISQELDLAR