Sample 3300017308

Overview

Basic Information
IMG/M Taxon OID	3300017308 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212137 \| Ga0186425
Sample Name	Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in K medium w/o SiO2, 17 C, 30 psu salinity and 268 ?mol photons light - Hemiselmis andersenii CCMP 644 (MMETSP0043_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	36025369
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	5
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Gulf of Mexico
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F020015	Metagenome / Metatranscriptome	226	N
F026478	Metagenome / Metatranscriptome	197	Y
F036560	Metagenome / Metatranscriptome	169	N
F082776	Metatranscriptome	113	N
F096687	Metagenome / Metatranscriptome	104	N

Family

Category

Number of Sequences

3D Structure?

F010032

Metagenome / Metatranscriptome

309

F020015

Metagenome / Metatranscriptome

226

F026478

Metagenome / Metatranscriptome

197

F036560

Metagenome / Metatranscriptome

169

F082776

Metatranscriptome

113

F096687

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186425_103424	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1743	Open in IMG/M
Ga0186425_110820	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	978	Open in IMG/M
Ga0186425_112907	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	864	Open in IMG/M
Ga0186425_114393	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	793	Open in IMG/M
Ga0186425_115982	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	723	Open in IMG/M
Ga0186425_120721	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	564	Open in IMG/M
Ga0186425_120968	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	557	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186425_103424

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii

1743

Open in IMG/M

Ga0186425_110820

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

978

Open in IMG/M

Ga0186425_112907

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

864

Open in IMG/M

Ga0186425_114393

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

793

Open in IMG/M

Ga0186425_115982

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

723

Open in IMG/M

Ga0186425_120721

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712

564

Open in IMG/M

Ga0186425_120968

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

557

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186425_103424	Ga0186425_1034242	F036560	RKMVFQTVFQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186425_110820	Ga0186425_1108201	F020015	DAVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186425_112907	Ga0186425_1129071	F010032	AMVSSRTLNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186425_114393	Ga0186425_1143931	F082776	RFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS
Ga0186425_115982	Ga0186425_1159821	F020015	AYYAVTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM
Ga0186425_120721	Ga0186425_1207211	F096687	VGLVVRVLGLLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186425_120968	Ga0186425_1209681	F026478	EIKMVGKTLLISLSLFLTLSLLVDAAKPKRKTVSIDDEETVKARDFALAEIIKLSDSYRDLKFNKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKTEL

Scaffold ID

Protein ID

Family

Sequence

Ga0186425_103424

Ga0186425_1034242

F036560

RKMVFQTVFQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK

Ga0186425_110820

Ga0186425_1108201

F020015

DAVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM

Ga0186425_112907

Ga0186425_1129071

F010032

AMVSSRTLNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM

Ga0186425_114393

Ga0186425_1143931

F082776

RFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS

Ga0186425_115982

Ga0186425_1159821

F020015

AYYAVTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM

Ga0186425_120721

Ga0186425_1207211

F096687

VGLVVRVLGLLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR

Ga0186425_120968

Ga0186425_1209681

F026478

EIKMVGKTLLISLSLFLTLSLLVDAAKPKRKTVSIDDEETVKARDFALAEIIKLSDSYRDLKFNKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKTEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017308: Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in K medium w/o SiO2, 17 C, 30 psu salinity and 268 ?mol photons light - Hemiselmis andersenii CCMP 644 (MMETSP0043_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences