Basic Information | |
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IMG/M Taxon OID | 3300017255 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212174 | Ga0186462 |
Sample Name | Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 314 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0378) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 18174634 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 54 |
Associated Families | 30 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii | 2 |
All Organisms → cellular organisms → Eukaryota → Sar | 19 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales | 2 |
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 7 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales | 1 |
All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem Assignment (GOLD) | |
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Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | estuarine biome → estuary → estuarine water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | English Channel | |||||||
Coordinates | Lat. (o) | 50.6 | Long. (o) | 4.25 | Alt. (m) | N/A | Depth (m) | N/A |
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