3300017244: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 380 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0992)

Overview

Basic Information

• IMG/M Taxon OID: 3300017244
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212054 | Ga0186342
• Sample Name: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 380 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0992)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43275450
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northern Baffin Bay
• Coordinates
  • Lat. (^o): 76.285
  • Long. (^o): -73.0575
  • Alt. (m): N/A
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021038	Metagenome / Metatranscriptome	220	Y
F051149	Metagenome / Metatranscriptome	144	Y
F073111	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186342_105686	Not Available	1660
Ga0186342_108469	Not Available	1378
Ga0186342_114139	All Organisms → cellular organisms → Eukaryota	1013

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186342_105686	Ga0186342_1056861	F073111	MSPTDLTLLEEKEVSKIGLKAVQKKHWQKALAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQWT
Ga0186342_108469	Ga0186342_1084691	F051149	MGANASSPGAFERLPDPVDEPTAMAILGKCFDRADWETITGGTGSVQKDTFITTITVRNHAPSLRAWLEFWRIDELLEVLESLDVMTPTDLMLLEEKEVLKIELKAVQKKHWQKAVTHSKYLEAINFDKPPSPLHLWLESWRLHRLKKGLFDLGCDVKEDIIDLDDTNAALLGMKLLEERRWKQATAQLVKVIRNFNFNDNTRNSAPSLITWLESLKLEELDEPLKLLGVVELCDLGDMDDRELHSLGLNKLQRKHWDMGMLQVLKAKGEAGLDGKNDDPTFRGFLESWRLGRLAPVMDDLGAYVQQDLLDLEPSEYSLLKMRPLEAKRFEQAMIALEEEFQQWA
Ga0186342_114139	Ga0186342_1141391	F021038	MKVLSAPADKPKIVFHVAMMSLQNFGFFIMYYSLWIATPDAEICADTRFAEGFMALTCFLVAFLCVGMGFGGYTDDAAVFAVYWIAHAVPAVGGYTTCTFLIPMARFSDSGMACASLSPVIGTIVQSVYVVHAGLYWCYVGNMVSVTYFSFLKPSFDFTVKPVVALSALALAEALVFGKLVDIGAFEPLSLPSPKTKLFGLFFMW