3300017240: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 93 ?mol photons light - Proboscia alata PI-D3 (MMETSP0176)

Overview

Basic Information

• IMG/M Taxon OID: 3300017240
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212310 | Ga0186598
• Sample Name: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 93 ?mol photons light - Proboscia alata PI-D3 (MMETSP0176)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47834312
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -64.0038
  • Long. (^o): -0.0025
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015298	Metagenome / Metatranscriptome	255	Y
F068121	Metagenome / Metatranscriptome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186598_120056	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	843
Ga0186598_127457	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	552

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186598_120056	Ga0186598_1200561	F015298	QKPVLIRTTNRTIAKRTRHYSMNGILKYLIAHKDWLLLVCFSVDAINTLITFPLIMWNGPKWLLKSADPDAKEKIEDASKANTTVDLSDTERKSFEVLWEIFGVCYEGYTGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSFLTFKTDNPQGKGKLMTILFFYWPCYGGYCLLHLIEHYLS
Ga0186598_127457	Ga0186598_1274571	F068121	MFCKNQKLSSDQEIEQELGLSREAHENRNKLNELPTGLMYPTPSDQTIWKDEKGRPWKLNAEPNAAYHQPTSVPVSFVKAHLSKFIPILKVPNLKFISPNDDGRYSEVIANRYTGELVIVQKIMGTFNLCTNAPDAMVAGKLPTDGEHKRWDVDPHNDNMYGNG